PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027647.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 682aa MW: 75147.6 Da PI: 5.7867

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027647.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	253	273	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg PCP027647.1 253 PCPEFRK-GTCRQGDACEYAHG 273 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MCSGSKRNPS STDTIMEREK QEGTRYNFSI LLELAACDDL EGFKGAVEEE GLDVDEASYW 60 CGRLIGSKKL GFEERTPLMI SAMFELLLFI VLLLVALLLR LRLSSSCLLL LLMRSSLDAN 120 GNQPGDLIAP AYSSSFSSRK KALEVMLKGV PSIDEPFDFS EQMINETEGQ EQQEMTTPRA 180 SKDGTEKKEY PVDLSLPDIK NGIYSTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR 240 RRDPRKYHYS CVPCPEFRKG TCRQGDACEY AHGIFECWLH PAQYRTRLCK DETGCTRRVC 300 FFAHKPEELR PLYASTGSAV PSPRSFSATA ASLDMGSIAP LSLNSPSMMI PPASTPPMTP 360 TGPSSPMSGN MWQNNPNFAP PTLQLPGSRL KSTLSARDMD FEIEMLSLER DRRRQQRLID 420 EISGSPSSWN KVLSPVPPFS ASGNRTGELN TIGGVNPTNL DDIFGSLDPA ILPQFNGLSR 480 DATASQLHSP TGIQMRQNMN LQARPSYSAS LASSPVRASP MFGVDASSAA AVFNSRSAAF 540 AKRSQSFIER SAGNRNSVVS SSADFGTIKP SNLSDWGSPG GKLDWGIQGE ELNKLRKSAS 600 FGFRSSGSSS PTASSMMPTN GDEPDVSWVQ SLVKDGPQAS QQRRQFGFED QQQQQCHPNN 660 GGPEMLPAWV EQLYFEQEQM VA

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MCSGSKRNPS STDTIMEREK QEGTRYNFSI LLELAACDDL EGFKGAVEEE GLDVDEASYW  60
CGRLIGSKKL GFEERTPLMI SAMFELLLFI VLLLVALLLR LRLSSSCLLL LLMRSSLDAN  120
GNQPGDLIAP AYSSSFSSRK KALEVMLKGV PSIDEPFDFS EQMINETEGQ EQQEMTTPRA  180
SKDGTEKKEY PVDLSLPDIK NGIYSTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYHYS CVPCPEFRKG TCRQGDACEY AHGIFECWLH PAQYRTRLCK DETGCTRRVC  300
FFAHKPEELR PLYASTGSAV PSPRSFSATA ASLDMGSIAP LSLNSPSMMI PPASTPPMTP  360
TGPSSPMSGN MWQNNPNFAP PTLQLPGSRL KSTLSARDMD FEIEMLSLER DRRRQQRLID  420
EISGSPSSWN KVLSPVPPFS ASGNRTGELN TIGGVNPTNL DDIFGSLDPA ILPQFNGLSR  480
DATASQLHSP TGIQMRQNMN LQARPSYSAS LASSPVRASP MFGVDASSAA AVFNSRSAAF  540
AKRSQSFIER SAGNRNSVVS SSADFGTIKP SNLSDWGSPG GKLDWGIQGE ELNKLRKSAS  600
FGFRSSGSSS PTASSMMPTN GDEPDVSWVQ SLVKDGPQAS QQRRQFGFED QQQQQCHPNN  660
GGPEMLPAWV EQLYFEQEQM VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-164	C3H family protein