PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP027594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 354aa MW: 38305.1 Da PI: 6.3102 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 257 | 290 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + PCP027594.1 257 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290 99*****************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence |
MEKMIGPNYI DDIDCGSLFD TIDDLLDFPT DDVESVLGPA PDCNAAFNSS SLWPSHSGSL 60 QPPNDAVFSC NSASDLSAEL DVPIEDIVQL EWLSNFCEDS FSGGSLTINK PDSSFINKES 120 SHQQFQTSSP ISVLDSSSSC SVEKNVPQSP GAVVPGKRGR ARSKRPRPAT FNPRSAIQLI 180 SPASSVTEAE ALQHQPLLPP KVHSDSENFA ESRPVIKIPK QASGEQKKKK KIKLTLPQAP 240 AEGNQSSGTT QGAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS 300 PTFVPALHSN SHKKVIEMRN KGGELIPFGE TTTAMTETPE LIPNTNHSIS LDYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 168 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 5e-56 | GATA family protein |