PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027593.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1354aa MW: 147831 Da PI: 8.2093

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027593.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.7	8.3e-22	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + + +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + ++ PCP027593.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--NILAKDVHGEIWDFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFFRA--GNGD 216 89**************************987555556..69999****************************************55..5666 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+v+r+ PCP027593.1 217 LCVGVRRA 224 7**996 PP
2	Auxin_resp	111.2	1.1e-36	278	361	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev Y+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ PCP027593.1 278 AATLAASGQPFEVAYYPRASTPEFCVKASAVRAAMQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPICWPESPWRLLQ 361 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1354 aa Download sequence
MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQLPPINT KVFYFPQGHA EYAHGRVDFG 60 NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVREGGF DLEDDGFVGY NGTVENPEKP 120 TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QNILAKDVHG EIWDFRHIYR 180 GTPRRHLLTT GWSNFVNHKK LVAGDSIVFF RAGNGDLCVG VRRAKRGIGG GPEYASGNSG 240 SQYGVYSGLS RKNGNKVMEK TCSGDANGKI RAEYVIEAAT LAASGQPFEV AYYPRASTPE 300 FCVKASAVRA AMQIRWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI CWPESPWRLL 360 QVSWDEPDLL QNVKRVSPWL VELVSSIPAI HLSPFSSPRK KLRLQHIPDY SLVGQLPMPS 420 VCSNSLNSSN LLCNVSDNLS AVIQGARHAQ FGLSSSELFF NKLQSSLFPI GFQQHGHFAP 480 LETIGGSFMR KAESNDNISC CLKKGIPTPN LKDNDEIKTP HIVLFGQVIF TGEQISKSSS 540 GDDSSSDGHS KKTTNCSDGS GSTSIGHGSV ENCSDGGSPR KTDYHQSDLS LETGYCKVFI 600 DSGEVGTLDL SVLRSYQELY GKLASMFGKE SSKKLRNVLY RDASGVVKHT GDEPFCKKTL 660 YGLTSKTVML HVCLCTSAPM DLEKGIEANK IRRNSQVSVA FNIHPPTLFF HHRLLLASIG 720 FSAYLSLHKR RSVYKMEAMS GKIVQNVSVS QCHQLSRKFD TQCKRGNFAP FLRNMLPFQR 780 GKLACTSIPS MQLRNLSKHQ SSCINRRTVQ CNAAPSTAAV PNLDKIDFSK LQNGSDIRGV 840 AVAGVEGEPI SLTEPVSEAI GAAFAAWLVE KKKADGSQRL RISVGHDSRI SAKKLEDAIS 900 RGIASAGLDV VQYGLASTPA MFNSTITEDE SFLCPSDGSI MITASHLPYN RNGFKFFTNS 960 GGLGKPDIKN ILERAADIYD KFTVEGLTSS KEKVLASVKR VDYMSVYTSD LVKAVRKAAG 1020 NIEKPLEGFH FVVDAGNGAG GFFAAKVLEP LGAVTTGSQF LEPDGMFPNH IPNPEDKTAM 1080 KAITQAVLDN KADLGIIFDT DVDRSAAVDS TGLEFNRNRL IALMSAIVLE EHPGTTIVTD 1140 SVTSDGLTTF IEKKLGGKHH RFKRGYKNVI DEAIRLNSVG EESHLAIETS GHGALKENHW 1200 LDDGAYLMVK ILNKLASARA SGQVGGSKVL TGLLEGLEEP GFSVELRLKI NQSHPDLKGG 1260 SFRDYGEAVL KHLENYINSD PKLKKAPVNY EGVRVSGYGG WFLLRLSLHD PVLPLNIEAP 1320 SNNEAVSLGN IVLAAVKEFP ALDTSALDKF VQAS

Sequence ? help Back to Top

Protein Sequence Length: 1354 aa Download sequence

MITVMDSVRE PLRSNSEKWL DSQFWHACAG GMVQLPPINT KVFYFPQGHA EYAHGRVDFG  60
NSRIPPLILS KISAIRYMAD PETDEVFAKM RLIPVREGGF DLEDDGFVGY NGTVENPEKP  120
TSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QNILAKDVHG EIWDFRHIYR  180
GTPRRHLLTT GWSNFVNHKK LVAGDSIVFF RAGNGDLCVG VRRAKRGIGG GPEYASGNSG  240
SQYGVYSGLS RKNGNKVMEK TCSGDANGKI RAEYVIEAAT LAASGQPFEV AYYPRASTPE  300
FCVKASAVRA AMQIRWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI CWPESPWRLL  360
QVSWDEPDLL QNVKRVSPWL VELVSSIPAI HLSPFSSPRK KLRLQHIPDY SLVGQLPMPS  420
VCSNSLNSSN LLCNVSDNLS AVIQGARHAQ FGLSSSELFF NKLQSSLFPI GFQQHGHFAP  480
LETIGGSFMR KAESNDNISC CLKKGIPTPN LKDNDEIKTP HIVLFGQVIF TGEQISKSSS  540
GDDSSSDGHS KKTTNCSDGS GSTSIGHGSV ENCSDGGSPR KTDYHQSDLS LETGYCKVFI  600
DSGEVGTLDL SVLRSYQELY GKLASMFGKE SSKKLRNVLY RDASGVVKHT GDEPFCKKTL  660
YGLTSKTVML HVCLCTSAPM DLEKGIEANK IRRNSQVSVA FNIHPPTLFF HHRLLLASIG  720
FSAYLSLHKR RSVYKMEAMS GKIVQNVSVS QCHQLSRKFD TQCKRGNFAP FLRNMLPFQR  780
GKLACTSIPS MQLRNLSKHQ SSCINRRTVQ CNAAPSTAAV PNLDKIDFSK LQNGSDIRGV  840
AVAGVEGEPI SLTEPVSEAI GAAFAAWLVE KKKADGSQRL RISVGHDSRI SAKKLEDAIS  900
RGIASAGLDV VQYGLASTPA MFNSTITEDE SFLCPSDGSI MITASHLPYN RNGFKFFTNS  960
GGLGKPDIKN ILERAADIYD KFTVEGLTSS KEKVLASVKR VDYMSVYTSD LVKAVRKAAG  1020
NIEKPLEGFH FVVDAGNGAG GFFAAKVLEP LGAVTTGSQF LEPDGMFPNH IPNPEDKTAM  1080
KAITQAVLDN KADLGIIFDT DVDRSAAVDS TGLEFNRNRL IALMSAIVLE EHPGTTIVTD  1140
SVTSDGLTTF IEKKLGGKHH RFKRGYKNVI DEAIRLNSVG EESHLAIETS GHGALKENHW  1200
LDDGAYLMVK ILNKLASARA SGQVGGSKVL TGLLEGLEEP GFSVELRLKI NQSHPDLKGG  1260
SFRDYGEAVL KHLENYINSD PKLKKAPVNY EGVRVSGYGG WFLLRLSLHD PVLPLNIEAP  1320
SNNEAVSLGN IVLAAVKEFP ALDTSALDKF VQAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein