PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027518.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 1015aa MW: 111048 Da PI: 6.1683

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027518.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.2e-06	537	557	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ Gd+Ck++H+ PCP027518.1 537 YCRHYLN-GKCNLGDQCKYSHD 557 69999.***********7 PP
2	zf-CCCH	18.6	3.3e-06	591	611	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f+ +G+C +Gd+C F+H PCP027518.1 591 LCHHFRDNGFCGRGDSCLFSH 611 8******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MEENKIETEK PSQTPIVFPP HRRRHLNSGT YRTLVRIFSH FKESQHSVSD QNVPQELNRD 60 NGNNESVQEA EKEVPENAEL VGPDNAKGRV ADECCNDNGF RERIEQIESL LSVEENEDFS 120 GLEDTIDIEN ILAIDLKDMG FFPKQMLVDE PELVVKGNRE PSVASLDHNQ NGGDKAALLT 180 NEEEHVETVT SQDSVQMVSV SHGSSLKTVE VTESLNPRES TEHKHSLSKT SALDVEPIMQ 240 LESMELQTPV SAEGAIESSI PITEVGAIKE TEIFSQNVPE AFDFSLNKDM FAEASKPTDY 300 SKNKSLLPET NSLEVVLEMP EKFKETEKPV CDITAMSSTN HMDDGDIEEG EISGDNGMDG 360 RPSDELLQDT VVLEEQKVHK GQISKDVIDR KEQLCEEVND KDFGSSSFLV DVVEDGKIGR 420 GVELRESRRA DMICRPGVVQ GQNVSDSHPL LDGGRIEMKD NRVEMGIDWS AAGNHGTASE 480 EKWDAGACNK RKRGPPNKEK KERKKAKERK KRAEKNRELG VKRLKLQPLQ KPKPVAYCRH 540 YLNGKCNLGD QCKYSHDTVP LTKSTPCGKF ARNECMKGDD CGYDHDLSKY LCHHFRDNGF 600 CGRGDSCLFS HKLSIMNSYH WSLPSTFAAK LSLIANQVYN VSQMPSKEES ETTACKPELK 660 PPMVQSNSRS QQVNIGGASQ QNVHALGFST GIHSHNNTKQ NVTENVLKKP ELATTGISFP 720 SVEKSSLVHS SMSKQGGVTP NRNMGTKAGS QIDQSPFSSV QNSNEILKRT PVTTPKGINF 780 LSFAKASPDV ARGKSQVSHQ TSPGVSETVQ NSNGMLKSDK TAASLGTSFN PFGKSSVASP 840 TGGQNLNAML QVNLPAASQG THFNPFGNSS LAGSGRDQNF KGIQPAASQG TSFNPFRKSL 900 VTSSNPFEKS SVSSSRTADP VSLTSCWGNG SNRDSHESQN TADKPQNSSA VSLRLPPSPI 960 TSGQSSDHVA TKFCKGTANS FQRGLFSTLA FAAKYRAQNM NQSIGSTDTQ VDKGN

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MEENKIETEK PSQTPIVFPP HRRRHLNSGT YRTLVRIFSH FKESQHSVSD QNVPQELNRD  60
NGNNESVQEA EKEVPENAEL VGPDNAKGRV ADECCNDNGF RERIEQIESL LSVEENEDFS  120
GLEDTIDIEN ILAIDLKDMG FFPKQMLVDE PELVVKGNRE PSVASLDHNQ NGGDKAALLT  180
NEEEHVETVT SQDSVQMVSV SHGSSLKTVE VTESLNPRES TEHKHSLSKT SALDVEPIMQ  240
LESMELQTPV SAEGAIESSI PITEVGAIKE TEIFSQNVPE AFDFSLNKDM FAEASKPTDY  300
SKNKSLLPET NSLEVVLEMP EKFKETEKPV CDITAMSSTN HMDDGDIEEG EISGDNGMDG  360
RPSDELLQDT VVLEEQKVHK GQISKDVIDR KEQLCEEVND KDFGSSSFLV DVVEDGKIGR  420
GVELRESRRA DMICRPGVVQ GQNVSDSHPL LDGGRIEMKD NRVEMGIDWS AAGNHGTASE  480
EKWDAGACNK RKRGPPNKEK KERKKAKERK KRAEKNRELG VKRLKLQPLQ KPKPVAYCRH  540
YLNGKCNLGD QCKYSHDTVP LTKSTPCGKF ARNECMKGDD CGYDHDLSKY LCHHFRDNGF  600
CGRGDSCLFS HKLSIMNSYH WSLPSTFAAK LSLIANQVYN VSQMPSKEES ETTACKPELK  660
PPMVQSNSRS QQVNIGGASQ QNVHALGFST GIHSHNNTKQ NVTENVLKKP ELATTGISFP  720
SVEKSSLVHS SMSKQGGVTP NRNMGTKAGS QIDQSPFSSV QNSNEILKRT PVTTPKGINF  780
LSFAKASPDV ARGKSQVSHQ TSPGVSETVQ NSNGMLKSDK TAASLGTSFN PFGKSSVASP  840
TGGQNLNAML QVNLPAASQG THFNPFGNSS LAGSGRDQNF KGIQPAASQG TSFNPFRKSL  900
VTSSNPFEKS SVSSSRTADP VSLTSCWGNG SNRDSHESQN TADKPQNSSA VSLRLPPSPI  960
TSGQSSDHVA TKFCKGTANS FQRGLFSTLA FAAKYRAQNM NQSIGSTDTQ VDKGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	490	512	KRKRGPPNKEKKERKKAKERKKR
2	490	515	KRKRGPPNKEKKERKKAKERKKRAEK
3	491	513	KRKRGPPNKEKKERKKAKERKKR
4	503	525	RKKAKERKKRAEKNRELGVKRLK