PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027358.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 329aa MW: 36590 Da PI: 5.1377

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027358.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	259	291	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL++rq+ +WF N+R ++ PCP027358.1 259 PYPTEEEKLQLSEMTGLDQRQINNWFINQRKRH 291 8*****************************885 PP
2	ELK	37.4	5.3e-13	211	232	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +Ll+KYsgyL+sL++EF+ PCP027358.1 211 ELKGMLLNKYSGYLSSLRKEFL 232 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MEEFYRMIAG VTCAGSDDHV NVHQQVENMS ASTSSASCGG FHGGGHVVDD HNMLLFGTEG 60 LGSDHMSDLI KSRIASHPRF SDLVTACLEC QKVGAPAEMK NLLEEIGRVS HPMSTCSEIG 120 ADPELDEFME SYIGVLHRFK EELSKPFDEA TTFLVNIQTQ LSNLCKGTFP NTWDNHSDEG 180 VGSSEEELNC GAVEAAESQE IGGAHSSGDR ELKGMLLNKY SGYLSSLRKE FLKKRKKGKL 240 PKDARTTLLD WWTIHYRWPY PTEEEKLQLS EMTGLDQRQI NNWFINQRKR HWKPSEDMRF 300 ALMEGVGGST GGPVMFDTGF GTGNIHDGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	236	LRKEFLKKRK
2	233	237	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	7e-76	TALE family protein