PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027354.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 507aa    MW: 56739.8 Da    PI: 4.7631
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027354.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind88.39.8e-2811159102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....................XTTSEEEEES CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....................kekiweFkhk 84 
                   +++d+++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+Y  +     ++k+ +                     +++ weF+++
   PCP027354.1   1 MVDDPSTDTVVSWSKSNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYVVRGEVLLDSKRVEkeakakellcsiwllegfrkvDPDRWEFANE 97 
                   899*************************************************8875443333333335677888998888877765449******** PP

                   XXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                    F +g+k+ll+++ r+k 
   PCP027354.1  98 GFLRGQKHLLKTVSRRKP 115
                   ***************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MVDDPSTDTV VSWSKSNNSF VVWNVPEFSR DLLPKYFKHN NFSSFVRQLN TYVVRGEVLL  60
DSKRVEKEAK AKELLCSIWL LEGFRKVDPD RWEFANEGFL RGQKHLLKTV SRRKPAHVQN  120
HQQQPPQVQS SQVGACVDVG NPGLEEEVES LKRDKNSLMQ ELVRLRQQQQ ATENQLHNVG  180
QRMQGMEQRQ QQMMSFLAKA MHNPGFLSQL VQHQNENNRL ITGSNKKRRL PRQEDEILVG  240
NLGSKVLDGQ MVKYQPSMNE AAKAMLRQIL KMNTSPKLEP SMINPDAFLI DNVPSNATDS  300
MNTSSQILGV TLSEVPPISA ECDMPDESRF PVSCHSTGIS EVQSSPFAVS NSVKETQVLE  360
ENMLNFQQDP VIPELTRMQG IVPESNVEIP NANFINSETG NAGYMGMSAG LDGRLPTDID  420
PFSPEPDAET LPDGVSSLPS INDIFWEQFL TASPLPGDTD EISLSSDDGV TVNQDLQLGK  480
ENGWDKSQHM NYITEQMQLL ASGSRIG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-120HSF family protein