PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027013.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GATA

Protein Properties

Length: 390aa MW: 42913.4 Da PI: 8.7489

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.9	1.6e-19	170	204	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l PCP027013.1 170 CQHCGADETPQWRAGPLGPKTLCNACGVRYKSGRL 204 *******************************9885 PP
2	GATA	24.6	3.6e-08	338	358	15	35
GATA 15 gpdgnktLCnaCGlyyrkkgl 35 gp gnktLC aCG++yrk g+ PCP027013.1 338 GPHGNKTLCDACGVRYRKSGK 358 89****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MESLDSLDGI LDFHSDDAGA EDKAHDFKPS IAPSGVLCPD DPSRPFSQTE EGVEEELEWL 60 SNKDAFPALE TFVDINLLIG QTAGIGTDKH QSPVSVLDNR TTPTTTLMSS CRTLKPPQGA 120 RSKGRRRRES SSFPGILEEH VFWSQSNNCK KDDNTIVKRT TGMATIGRVC QHCGADETPQ 180 WRAGPLGPKT LCNACGVRYK SGRLVPEYRP ASSPTFSSKL HSNSHRKIME MRKQKQGTGI 240 FPGDSGEQLF SNQAHKDSKD GRIKAKQQGQ QLGENVSIAG FKRPCNGGQL SLESKPCGIR 300 YKSEMIVRKC QHCRTKETLQ WLASSTGKKT LCDVALLGPH GNKTLCDACG VRYRKSGKLV 360 PEYRPASSPT FSRELHSNSL IKSEALSEYQ

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MESLDSLDGI LDFHSDDAGA EDKAHDFKPS IAPSGVLCPD DPSRPFSQTE EGVEEELEWL  60
SNKDAFPALE TFVDINLLIG QTAGIGTDKH QSPVSVLDNR TTPTTTLMSS CRTLKPPQGA  120
RSKGRRRRES SSFPGILEEH VFWSQSNNCK KDDNTIVKRT TGMATIGRVC QHCGADETPQ  180
WRAGPLGPKT LCNACGVRYK SGRLVPEYRP ASSPTFSSKL HSNSHRKIME MRKQKQGTGI  240
FPGDSGEQLF SNQAHKDSKD GRIKAKQQGQ QLGENVSIAG FKRPCNGGQL SLESKPCGIR  300
YKSEMIVRKC QHCRTKETLQ WLASSTGKKT LCDVALLGPH GNKTLCDACG VRYRKSGKLV  360
PEYRPASSPT FSRELHSNSL IKSEALSEYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	9e-45	GATA family protein