PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026989.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 505aa MW: 51905.3 Da PI: 8.0568

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026989.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.9	1.1e-67	286	446	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa a +++ +++++k++r l ++q + s+t++s+++++++ PCP026989.1 286 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LVGASQITPSHTSTSNTTPPRS 382 6789***********************************************9999999998884455555566.56899999********** PP DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +tss lP +v+++avf+cvrv++v+dge+e+aYq++v+i+GhvfkG+LydqG++ PCP026989.1 383 YDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGHVFKGFLYDQGVD 446 999*******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MYEHGFVAKI LMKNTRVVVA TTRRLPSDSG AFADWVGSSS SNNSATTGRP TTHHPDIDVL 60 SLGFNAGPAA AGPSSASPST MSMWSSAPSN RPLTYGHLPP EMAGMVGLRD VFVVAPAAAY 120 HHNTHLHHHP GHDPNLLSSS SDHHHSINAS NNPATALGVG VGVIPLLTAT PCLAPPNMSN 180 VDDDDEDTHT PAGMSMGMGM SMGMMSGGHQ RNNRSSSAAG GGGGIQLWQQ NPPHFFKKNH 240 HEAAVTTNLG GIHLNQDGGG GGRGGVGGGR GNNIMNAGSA AASSGSSTMT CQDCGNQAKK 300 DCTHRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMSA AAGGGAGSNS GSTSSAKKPR 360 LVGASQITPS HTSTSNTTPP RSYDTSSSHQ DAGFKDPLPG QVRAPAVFKC VRVTAVEDGE 420 DEYAYQAVVK INGHVFKGFL YDQGVDGREG FPDISELHLG GGGTTSGGNG GGRNGASSPI 480 LDPSDVYAAS GAGLLGGSNF GNPIN

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MYEHGFVAKI LMKNTRVVVA TTRRLPSDSG AFADWVGSSS SNNSATTGRP TTHHPDIDVL  60
SLGFNAGPAA AGPSSASPST MSMWSSAPSN RPLTYGHLPP EMAGMVGLRD VFVVAPAAAY  120
HHNTHLHHHP GHDPNLLSSS SDHHHSINAS NNPATALGVG VGVIPLLTAT PCLAPPNMSN  180
VDDDDEDTHT PAGMSMGMGM SMGMMSGGHQ RNNRSSSAAG GGGGIQLWQQ NPPHFFKKNH  240
HEAAVTTNLG GIHLNQDGGG GGRGGVGGGR GNNIMNAGSA AASSGSSTMT CQDCGNQAKK  300
DCTHRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMSA AAGGGAGSNS GSTSSAKKPR  360
LVGASQITPS HTSTSNTTPP RSYDTSSSHQ DAGFKDPLPG QVRAPAVFKC VRVTAVEDGE  420
DEYAYQAVVK INGHVFKGFL YDQGVDGREG FPDISELHLG GGGTTSGGNG GGRNGASSPI  480
LDPSDVYAAS GAGLLGGSNF GNPIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	259	269	GGGGRGGVGGG
2	260	270	GGGGRGGVGGG
3	261	271	GGGGRGGVGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-70	SRS family protein