PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP026976.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1012aa    MW: 113252 Da    PI: 8.3554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP026976.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06174193525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  lC++++  G C++ + C+F H
  PCP026976.1 174 LCKDYMT-GRCRRASDCQFLH 193
                  9******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    
MNRTSRKRSS KWDLVEEPQY EDVNMQDNGW MGKAGRPFRP KESGRDWPSP ETNDLQRPKQ  60
DLDLPSREPL PGSRGSHKHE STNKRYNRYM DDSMVWDGDE NCSTRMSPGF DDWKEHRSQS  120
PKSGWKRSLR GRSRSRSRSW SKSQSWSRSP DHGYRRESLF LDRNRGRPGI SAQLCKDYMT  180
GRCRRASDCQ FLHEGNSKYD DSWESRHRKR GALRYASPPE TTEYYPLKSE RYSVYCSDFV  240
KGKCRKGASC KFDHHRPSDG FSKGSTIENT RERENERRNR DTSIERGAER VSHRSGDIPC  300
KFFAAGNCRN KKYCRFSHHI QAYISPERKS KDVRWGPGHS LNDAGPAWNG PKWSDTVTLS  360
DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDQNDENKNC ADRNVNHEAA ERNEKDANLW  420
KEDNVGACVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGHITQGA EPSTLVHGAA  480
SIIEPEIAER SDFLQNKDLR GDGVISLPYD NRNAIEEPSS FRNNLSVTAN IVGYQSFDNS  540
GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA KTSLVDGIPQ  600
VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNSH NAVSTPTLLP QSEGSSEQLL  660
GATFQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLPNSAG NTSVDGKVEK LSNVVSPSSL  720
PSGANTNNYH QTNNPVQEPT HKNHQLSQLE CGAKPEVVKG NGELGAEEIK SDQEENNSPV  780
NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK DAYKTIVKKV  840
VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVASP VDESIALSCF PSIPSLGSLH  900
LRTIAYVEKD AQGLKENNLR FFTFLVSYKT PPNTPGVFML RQPLRIVALN SITEHDAVVC  960
GMLIRVMVLA IRFASQFFDL GNVRSWPKYD DHCQQQLVEN CIGLGDIKSV NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RGRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-09C3H family protein