PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP026976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 1012aa MW: 113252 Da PI: 8.3554 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 174 | 193 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++++ G C++ + C+F H PCP026976.1 174 LCKDYMT-GRCRRASDCQFLH 193 9******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1012 aa Download sequence |
MNRTSRKRSS KWDLVEEPQY EDVNMQDNGW MGKAGRPFRP KESGRDWPSP ETNDLQRPKQ 60 DLDLPSREPL PGSRGSHKHE STNKRYNRYM DDSMVWDGDE NCSTRMSPGF DDWKEHRSQS 120 PKSGWKRSLR GRSRSRSRSW SKSQSWSRSP DHGYRRESLF LDRNRGRPGI SAQLCKDYMT 180 GRCRRASDCQ FLHEGNSKYD DSWESRHRKR GALRYASPPE TTEYYPLKSE RYSVYCSDFV 240 KGKCRKGASC KFDHHRPSDG FSKGSTIENT RERENERRNR DTSIERGAER VSHRSGDIPC 300 KFFAAGNCRN KKYCRFSHHI QAYISPERKS KDVRWGPGHS LNDAGPAWNG PKWSDTVTLS 360 DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDQNDENKNC ADRNVNHEAA ERNEKDANLW 420 KEDNVGACVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGHITQGA EPSTLVHGAA 480 SIIEPEIAER SDFLQNKDLR GDGVISLPYD NRNAIEEPSS FRNNLSVTAN IVGYQSFDNS 540 GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA KTSLVDGIPQ 600 VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNSH NAVSTPTLLP QSEGSSEQLL 660 GATFQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLPNSAG NTSVDGKVEK LSNVVSPSSL 720 PSGANTNNYH QTNNPVQEPT HKNHQLSQLE CGAKPEVVKG NGELGAEEIK SDQEENNSPV 780 NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK DAYKTIVKKV 840 VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVASP VDESIALSCF PSIPSLGSLH 900 LRTIAYVEKD AQGLKENNLR FFTFLVSYKT PPNTPGVFML RQPLRIVALN SITEHDAVVC 960 GMLIRVMVLA IRFASQFFDL GNVRSWPKYD DHCQQQLVEN CIGLGDIKSV NF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RGRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 9e-09 | C3H family protein |