PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026936.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 535aa MW: 60538.6 Da PI: 6.8245

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026936.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93	3e-29	124	209	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+ ++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea PCP026936.1 124 RWPRQETLTLLEIRSGLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 209 8*********************************998***************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MEMEDQYNMA DLRQLMNGGR THFPSIPLQP TTELFPNHHR GPPPPPPSLH HQHHPYEQLM 60 MIDRPQTHEM IPRGLHHHHE FRSPDSTSAA GVTTPTTVTA APSLSGGGLE AEAGGCLGGE 120 GSGRWPRQET LTLLEIRSGL DFKFKEANQK GPLWDEVSRI MCEEHGYQRS GKKCREKFEN 180 LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGETTNTVVS PSLPAETHFV GNNSNNYRYQ 240 AAGNAQANQE ITTPYHHQSS DQKHCDSLSL SNSSEFETSS SEDQDINNDV SAAAMDNDSQ 300 EVKTTRKRRG GIGRRGWKTK IKEFIDAQMR KLIEKQEEWL ERLMRTLEQK ERERVVREEE 360 WRKQEVDRVE REQNFWAKER AWIEARDKAL MDALHKISGG SSSTDQAKAT NYNSSSPDHN 420 DPDQIVHNMS RSAKELFMNK KRKENANSRS ASAACYFQSN ESCSSLYSSQ GGYCGEMSND 480 QGNHDGSNNS PNGGNNASNV GSNAVPDNCF PFLMSEGENL WENYGLKLSK GSQNQ

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MEMEDQYNMA DLRQLMNGGR THFPSIPLQP TTELFPNHHR GPPPPPPSLH HQHHPYEQLM  60
MIDRPQTHEM IPRGLHHHHE FRSPDSTSAA GVTTPTTVTA APSLSGGGLE AEAGGCLGGE  120
GSGRWPRQET LTLLEIRSGL DFKFKEANQK GPLWDEVSRI MCEEHGYQRS GKKCREKFEN  180
LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGETTNTVVS PSLPAETHFV GNNSNNYRYQ  240
AAGNAQANQE ITTPYHHQSS DQKHCDSLSL SNSSEFETSS SEDQDINNDV SAAAMDNDSQ  300
EVKTTRKRRG GIGRRGWKTK IKEFIDAQMR KLIEKQEEWL ERLMRTLEQK ERERVVREEE  360
WRKQEVDRVE REQNFWAKER AWIEARDKAL MDALHKISGG SSSTDQAKAT NYNSSSPDHN  420
DPDQIVHNMS RSAKELFMNK KRKENANSRS ASAACYFQSN ESCSSLYSSQ GGYCGEMSND  480
QGNHDGSNNS PNGGNNASNV GSNAVPDNCF PFLMSEGENL WENYGLKLSK GSQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	1e-69	Trihelix family protein