PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP026843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 25844.9 Da PI: 8.4741 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.8e-24 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en s +qvtfskRr+gi+KKA ELSvLC+a+vavi+fs+ gk++ y PCP026843.1 21 KLENLSSKQVTFSKRRAGIFKKAAELSVLCGADVAVIVFSTAGKVFCY 68 67999***************************************9877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MVLLKNLPKK TQGRKRIEIK KLENLSSKQV TFSKRRAGIF KKAAELSVLC GADVAVIVFS 60 TAGKVFCYGH PSVDTTLDWY CSGVTPPAVS DDTAGDQSPN RVPVAEFNKE YMEAIRELEE 120 QKKRVAEVKE AAKMKKIVMG VVGGCGERFW WEDESVDLDA LDVQEVEHYL ITLEDVRKQV 180 AARLHEMKIL NGTLNPGALP PIPAVHRLCH LPMMTNGFSG HGAQFGGGYR GFGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-27 | M-type_MADS family protein |