PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026730.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 941aa MW: 103597 Da PI: 5.1398

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026730.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	107	162	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k PCP026730.1 107 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 162 7999************************************************9877 PP
2	START	226	1.1e-70	276	499	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 + ++a++el k+a+a+ep+Wv+s+ e++n+de++++f + +s+ea+r++g+v+ +l++lv++++d++ qW+e+++ ka+t++vi PCP026730.1 276 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEVPgngrpkRSIEASRETGLVFVDLPRLVQSFMDVN-QWKEMFPcmisKAATVDVI 372 56789*********************************77544999**************************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ++g ga+qlm+aelq+l+plvp R+++fvR+++ql+ ++w+ivdvS+d +++ ++s+v+++++pSg++ie+k ngh+kv+wveh +++ ++ PCP026730.1 373 NNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSPEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKTNGHCKVIWVEHLECQRST 469 *****************************************************98.9********************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 ++ ++r +v+sgla+ga++wvatlq qce+ PCP026730.1 470 IQTMYRTIVNSGLAFGARHWVATLQLQCER 499 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence
MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAASR EVEEGDEGSG GGASAAVGSV 60 RRREDTTEIS SENSGPGRSR SEDEFDGEGE HDEDDVDGDN KNKKKKRKKY HRHTTEQIRE 120 MEALFKESPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKGEMEKL 180 RDENKAMREQ INKACCPNCG TATTSRDATL TTEEQQLRIE NARLKSEVEK LRAALVKYPP 240 GTSSPSCSAG QDQENRSSLD FYTGIFGLEE SRIMEIVNQA MEELKKMATA GEPLWVRSVE 300 TGREILNYDE YIKEFNIEVP GNGRPKRSIE ASRETGLVFV DLPRLVQSFM DVNQWKEMFP 360 CMISKAATVD VINNGEGDNR NGAVQLMFAE LQMLTPLVPT REVYFVRCCK QLSPEQWAIV 420 DVSIDKVEDN IDASLVKCRK RPSGCIIEDK TNGHCKVIWV EHLECQRSTI QTMYRTIVNS 480 GLAFGARHWV ATLQLQCERL VFFMATNVPM KDSTGVATLA GRKSILKLAQ RMTASFCRAI 540 GASSYHTWTK ISSKTGDDIR IASRKNLNDP GEPLGVILCA VSSVWLPVSP YLLFDFLRDE 600 TRRNEWDIML NGGPAQTIAN LSKGQDRGNA VTIQSMKSKE NSMWILQDTC INSYESMVVY 660 APVDITGMQS VMTGCDASNI AILPSGFSIL PDGLESRPMV LTSSQEDRSS EGGTLLTAAF 720 QVLTNSSPTA KLTMESVESV NTLISCTLRN IKTSLQLVLE DESFVTLFIR FGWNGGLGTE 780 AQLTNAQSKQ QHRLNLQRLQ GNPELIRRVA FTGLALRFLG RNRHSKKSLG LANGSAFFKL 840 DNVPNLELVI WVVGLVLLLL PDPPLVLGVR GEAGDFDGDG LVAGGADDAA LEVLQGSDGR 900 EESEALWGGE GEGGSGFGEG GEGGGGAMEE RSGELGRGVE E

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence

MGVDMSNNPP TSRTKDFFAS PALSLSLAGI FRDAGAAASR EVEEGDEGSG GGASAAVGSV  60
RRREDTTEIS SENSGPGRSR SEDEFDGEGE HDEDDVDGDN KNKKKKRKKY HRHTTEQIRE  120
MEALFKESPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKGEMEKL  180
RDENKAMREQ INKACCPNCG TATTSRDATL TTEEQQLRIE NARLKSEVEK LRAALVKYPP  240
GTSSPSCSAG QDQENRSSLD FYTGIFGLEE SRIMEIVNQA MEELKKMATA GEPLWVRSVE  300
TGREILNYDE YIKEFNIEVP GNGRPKRSIE ASRETGLVFV DLPRLVQSFM DVNQWKEMFP  360
CMISKAATVD VINNGEGDNR NGAVQLMFAE LQMLTPLVPT REVYFVRCCK QLSPEQWAIV  420
DVSIDKVEDN IDASLVKCRK RPSGCIIEDK TNGHCKVIWV EHLECQRSTI QTMYRTIVNS  480
GLAFGARHWV ATLQLQCERL VFFMATNVPM KDSTGVATLA GRKSILKLAQ RMTASFCRAI  540
GASSYHTWTK ISSKTGDDIR IASRKNLNDP GEPLGVILCA VSSVWLPVSP YLLFDFLRDE  600
TRRNEWDIML NGGPAQTIAN LSKGQDRGNA VTIQSMKSKE NSMWILQDTC INSYESMVVY  660
APVDITGMQS VMTGCDASNI AILPSGFSIL PDGLESRPMV LTSSQEDRSS EGGTLLTAAF  720
QVLTNSSPTA KLTMESVESV NTLISCTLRN IKTSLQLVLE DESFVTLFIR FGWNGGLGTE  780
AQLTNAQSKQ QHRLNLQRLQ GNPELIRRVA FTGLALRFLG RNRHSKKSLG LANGSAFFKL  840
DNVPNLELVI WVVGLVLLLL PDPPLVLGVR GEAGDFDGDG LVAGGADDAA LEVLQGSDGR  900
EESEALWGGE GEGGSGFGEG GEGGGGAMEE RSGELGRGVE E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	KKKKRK
2	103	109	KKKKRKK
3	105	109	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein