PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026351.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 363aa MW: 42818.8 Da PI: 4.5244

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026351.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.1	5.6e-14	121	206	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v L+e+ ++ +l+r++l+ +W ev+ k+ ++ ++er+ +qCk+ ++ l+++ykk+ke +++ +ss+++yf+++e PCP026351.1 121 EWTEHAVFMLLEVWGDRFLQLGRKSLRSDDWNEVAYKVsEASKIERTETQCKSMLDMLKRKYKKEKEKMEEM-GLNSSKWAYFKKME 206 5***********************************677899**********************96.89999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDDMEDDPRY HPKSYSASHH NSSGRRKIHT RNNQYSRPVP NRYAEDDDDE LDDFDEGNGR 60 EDQYNDEEDE HRHGFNRNFD ADEDFERHPK KRKVKNLESR YEFAPRVRLP NREPGFRAEE 120 EWTEHAVFML LEVWGDRFLQ LGRKSLRSDD WNEVAYKVSE ASKIERTETQ CKSMLDMLKR 180 KYKKEKEKME EMGLNSSKWA YFKKMEMLMA SSSRQETGLA CGVDSGEYVF MNTRVYLEQS 240 NGFDEMRDSP GESETDDDGD ENGNDDFDVF PPRMAGMRGE DGDEGSSYRV LADSIHKFGE 300 IYEKIESSKR QQMRELEKMR KNFNKELELQ KKQILERAQV EIAKIQEADD DDETDVSVDD 360 LSE

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDDMEDDPRY HPKSYSASHH NSSGRRKIHT RNNQYSRPVP NRYAEDDDDE LDDFDEGNGR  60
EDQYNDEEDE HRHGFNRNFD ADEDFERHPK KRKVKNLESR YEFAPRVRLP NREPGFRAEE  120
EWTEHAVFML LEVWGDRFLQ LGRKSLRSDD WNEVAYKVSE ASKIERTETQ CKSMLDMLKR  180
KYKKEKEKME EMGLNSSKWA YFKKMEMLMA SSSRQETGLA CGVDSGEYVF MNTRVYLEQS  240
NGFDEMRDSP GESETDDDGD ENGNDDFDVF PPRMAGMRGE DGDEGSSYRV LADSIHKFGE  300
IYEKIESSKR QQMRELEKMR KNFNKELELQ KKQILERAQV EIAKIQEADD DDETDVSVDD  360
LSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	187	KRKYKKEKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	9e-81	Trihelix family protein