PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026018.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 301aa MW: 31381.3 Da PI: 9.9329

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	37	60	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H PCP026018.1 37 KSKPCTKFFSTAGCPFGESCHFLH 60 7789******************** PP
2	zf-CCCH	21.4	4.5e-07	102	126	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+ + Ck+Gd+C+FaHg+ PCP026018.1 102 SRICSKYNSPEGCKFGDKCHFAHGE 126 577888888888***********96 PP
3	zf-CCCH	36.4	8.9e-12	268	292	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G+C +G+rC+FaHg PCP026018.1 268 YKTKLCDNFTK-GICTFGERCHFAHG 292 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MDTRKRGRHE GGGFHSNGGF KKNKQELESF PTGVGSKSKP CTKFFSTAGC PFGESCHFLH 60 YVPGGYNAVA KMMNLVPAPP PARNIPGPPS HSNGSNSSGV KSRICSKYNS PEGCKFGDKC 120 HFAHGEWELG KPLAQSHDDP RAMGPGPGRM GNWMEPHLAG PASSFGASST AKISVDASHA 180 GAIIGKGGVH SKQICLQTGA KLSIRDHESN PNLRNIELEG TFEQIQQASA MVSKLIATVS 240 TSGPGKAPGG GGGGGGGRGA PAPPRSNYKT KLCDNFTKGI CTFGERCHFA HGAAELRKSG 300 V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	7e-57	C3H family protein