PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025321.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1605aa MW: 176774 Da PI: 5.9205

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025321.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.7e-23	259	360	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + PCP025321.1 259 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 352 99***************************8544444..48********************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ PCP025321.1 353 LLLGIRRA 360 9**997 PP
2	Auxin_resp	119	3.8e-39	385	468	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k PCP025321.1 385 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 468 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1605 aa Download sequence
MKGVVAVAVG LAILVLVEPG HATVTCQQAV SSLTPCLPYL TSGAETPPAA CCSGVSGLKQ 60 LTQTTEDRRT ACQCLKDAAS QNQGIREDAA AGLPEACQVQ INVPISRSVD CNHQIGASEN 120 VALGSDFESM DAYFMRTDTS IEAIAEEKKC LNSELWHACA GPLVSLPLLG SRVVYFPQGH 180 SEQVAASTHK EVDAHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKE 240 VYLLPAELGA ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI 300 ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA 360 NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY 420 HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGDRQ 480 PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SGVPSFHGLK DGDMGINSPL MWLQGGLGDQ 540 AMQSLNFQGF GVSPWMQPRL DATMAGLQPD LYQAMAAAAL QEMRAVDSSK GSSQSLLPFQ 600 QSSSVSNGAA AVLQRQVLPQ SQSQNAYLQN FQENQAPAQA QVLQQQSQRY HPYSDQRQQQ 660 QQQQQQQQQQ QHQQQQQQQQ QHQQQQHQQQ QQHQQQQQLN QQQQQQQQHQ LQQSHHLHEL 720 SVQQQIPNAM SALPNFASIT QSQSASIQSI SSQSQQQSFP DPVGIPIPSS DVPPIHSILG 780 SLSQDGASHL LNLSGSNSAI SSSLLPKQIT GEPQLSSGAA QCVLPQVEQL GTPQSSFSEL 840 TALPPFPGRE YSAFQGGTDP QSNLLFGVNI DSSSLMLHNG IPNLRNIGNG NDSLSLPFGA 900 SYTSGTGNDF PLNSDMTTSS CVDESGFLQS SENVDQVNPT RTFVKVHKSG SFGRSLDISK 960 FSSYDELRSE LSRMFGLEGQ LEDRQRSGWQ LVFVDRENDV LLLGDDPWQE FVNNVGYIKI 1020 LSPMEVQQMG KEGLNRVASI PNNKLSNGSN TCDDYASRQK LRNSSNGIVA ASSSDKVTPV 1080 LKSDCESHCG NVSIPYPFGI GPSINCYLYD WFEIDCKNST SGPKPFLKNT TIEVLDISVE 1140 GTLRVEHPVR FFNRTMVPQL PNFTGSPFLY SQEHNQFTAV SCGLFAFVKS YPDQRVIGGC 1200 MSACDASAGP EDNHGCIGIN CCQIALPGNL SVIDADIKPE SEESTINGKG GVSADNYAFL 1260 VQQDWFYHNL SNFRDVKDMD SVPVVLEWSI SLDDMTSSLV KLYKEFVLEF DLLLNGSPQI 1320 RKFDSTPFCI TYMTSYAYNQ SKIKCFCPGG FEGNPYLLQP CQDIDECNGS DPCPDIGAWS 1380 LGGCVICKNT FGGHTCYSNT TGVVCDYYGT EGEKFKVEKI KLFKSKELEM STDNFNINRI 1440 LGHGGQGTVY KGMLTNGRIV AVKKSEVVGE GKLSEFINEV VLLSQINHRN VVKLLGCCLE 1500 TEVPILVYEF IPNGTLSQYI QGNVEDCQLP WKMRLRVATE VAGALSYLHS AASFPIFHRD 1560 IKSSNILLDE KCRAKVADFG TSRSISIDHT HLTTLVNGTF GYLDP

Sequence ? help Back to Top

Protein Sequence Length: 1605 aa Download sequence

MKGVVAVAVG LAILVLVEPG HATVTCQQAV SSLTPCLPYL TSGAETPPAA CCSGVSGLKQ  60
LTQTTEDRRT ACQCLKDAAS QNQGIREDAA AGLPEACQVQ INVPISRSVD CNHQIGASEN  120
VALGSDFESM DAYFMRTDTS IEAIAEEKKC LNSELWHACA GPLVSLPLLG SRVVYFPQGH  180
SEQVAASTHK EVDAHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLSPQEQKE  240
VYLLPAELGA ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI  300
ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA  360
NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY  420
HTRVSVGMRF RMLFETEESS VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGDRQ  480
PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP SGVPSFHGLK DGDMGINSPL MWLQGGLGDQ  540
AMQSLNFQGF GVSPWMQPRL DATMAGLQPD LYQAMAAAAL QEMRAVDSSK GSSQSLLPFQ  600
QSSSVSNGAA AVLQRQVLPQ SQSQNAYLQN FQENQAPAQA QVLQQQSQRY HPYSDQRQQQ  660
QQQQQQQQQQ QHQQQQQQQQ QHQQQQHQQQ QQHQQQQQLN QQQQQQQQHQ LQQSHHLHEL  720
SVQQQIPNAM SALPNFASIT QSQSASIQSI SSQSQQQSFP DPVGIPIPSS DVPPIHSILG  780
SLSQDGASHL LNLSGSNSAI SSSLLPKQIT GEPQLSSGAA QCVLPQVEQL GTPQSSFSEL  840
TALPPFPGRE YSAFQGGTDP QSNLLFGVNI DSSSLMLHNG IPNLRNIGNG NDSLSLPFGA  900
SYTSGTGNDF PLNSDMTTSS CVDESGFLQS SENVDQVNPT RTFVKVHKSG SFGRSLDISK  960
FSSYDELRSE LSRMFGLEGQ LEDRQRSGWQ LVFVDRENDV LLLGDDPWQE FVNNVGYIKI  1020
LSPMEVQQMG KEGLNRVASI PNNKLSNGSN TCDDYASRQK LRNSSNGIVA ASSSDKVTPV  1080
LKSDCESHCG NVSIPYPFGI GPSINCYLYD WFEIDCKNST SGPKPFLKNT TIEVLDISVE  1140
GTLRVEHPVR FFNRTMVPQL PNFTGSPFLY SQEHNQFTAV SCGLFAFVKS YPDQRVIGGC  1200
MSACDASAGP EDNHGCIGIN CCQIALPGNL SVIDADIKPE SEESTINGKG GVSADNYAFL  1260
VQQDWFYHNL SNFRDVKDMD SVPVVLEWSI SLDDMTSSLV KLYKEFVLEF DLLLNGSPQI  1320
RKFDSTPFCI TYMTSYAYNQ SKIKCFCPGG FEGNPYLLQP CQDIDECNGS DPCPDIGAWS  1380
LGGCVICKNT FGGHTCYSNT TGVVCDYYGT EGEKFKVEKI KLFKSKELEM STDNFNINRI  1440
LGHGGQGTVY KGMLTNGRIV AVKKSEVVGE GKLSEFINEV VLLSQINHRN VVKLLGCCLE  1500
TEVPILVYEF IPNGTLSQYI QGNVEDCQLP WKMRLRVATE VAGALSYLHS AASFPIFHRD  1560
IKSSNILLDE KCRAKVADFG TSRSISIDHT HLTTLVNGTF GYLDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	ARF family protein