PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025170.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 1458aa MW: 162772 Da PI: 6.4905

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025170.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.4	1.1e-22	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ ++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l PCP025170.1 121 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfTLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 215 99***************************9666655.49********************************************..8889999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PCP025170.1 216 FLGIRRA 222 **997 PP
2	Auxin_resp	118.5	5.5e-39	247	330	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+v+YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k PCP025170.1 247 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 330 79*****************************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1458 aa Download sequence
MIGGGGGGVE KKCLNSELWH ACAGPLVSLP TRGTRVVYFP QGHSDQVAAT TNKQVDAHLP 60 NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLTPQE QKETFLPMEL GLPSKQPTNY 120 FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFTLQPPAQE LIARDLHDVE WKFRHIFRGQ 180 PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLFLGIR RATRPQTVMP SSVLSSDSMH 240 IGLLAAAAHA ASTNSCFTVF YNPRASPSEF VIPLSKYIKA VFHTRVSVGM RFRMLFETEE 300 SSVRRYMGTI TGISDLDPVR WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP 360 SLFPLRLKRP WYPGASSMHD NRDESNSLMW LRGGAVEQGL QSMNFQNVGM FPWMQQRLDS 420 TVIGNDHNQQ YQAMLAAGSQ NLGSGDQLRQ QMMHFQQPFQ YVQQSGSHNP VLQLQQQAIQ 480 QSIPHNILQG QPQVSMENMP QHLLQQQFNN QTDEQAQQQQ NAYQDALKVQ NEQLHQSQQM 540 IVSSSSFPKT DLSDSSTKFS ASTTPRQNML GTLCPDGSGN LLSMSRAGHS MPTEQSPQQS 600 WAPKYAHGQA NAFAHSMSFP PFNEKDNAVE QENLNSDTHN PTLFGVNIES SGLLFPTSAP 660 SFATSSNDAD ISMPLGDSGL QSSLYGCMQD SSELLHSAGQ VDPPTPNNCT FVKVYKSGSV 720 GRSLDISRFS SYHELREELG QMFGIEGKLE DRLRSGWQLV FVDREDDVLL LGDDPWESFV 780 NNVWYIKILS PEDVHKMGHQ AVESFSPNTV HGYRNKNWKN SLLGPVGWPI LGSLPHLSIR 840 LHEDLFKLSK INGPLFSLKL GSQPVIVASS PEMTCQIFRQ HDDVFCNHIV TEAFGIMSYE 900 GVSRFFFSGG YAVESAKKNI GGKDCLQNRK YYMKSSRRAL TILDQCLTIA HIRQTQSHLT 960 VSGTLFDPYA AAKIIAFCSE SNSGDLRHAF RLFRHMPHRT TYIWNVMIRA FAERNESMRA 1020 LSLYNDMIQS GLLPNNYTFS FLLRACTDLS YLSMGLVLHC HAIRLGWEAY DFVQNGLIHL 1080 YVTCDSINPA RKLFDMSVYK DVVTWTALIN GYVKSSQVEV ARELFDEMPE KNAVSWSALI 1140 NGYVQVGLFS EALELFVDMQ VSGVLPNHAG IVGALTACAF LGALDQGRWI HAYVSRKGMK 1200 LDRVLGTALV DMYTKCGCVE TAHAVFNEMP SRDVFTFTSL ISGLANCGES ESAISLFASM 1260 QDEGIAPNEV TFICVLSACS RMGLVDEGLQ IFESMSNTFG IQPGVQHYGC LVDLLGRAGM 1320 LEEAKKVVRE IPMEPDSYVL GALLNACRVH GDVELGREMV ERLSGKSLDH SGVRVLLSNI 1380 YASANQWDDV TTLRKGMEEK KVRKVPGCSS VEVNGEVFEF VAGERSHVLM DEITLVSLAI 1440 DKHLKSFWID RDDDKLTE

Sequence ? help Back to Top

Protein Sequence Length: 1458 aa Download sequence

MIGGGGGGVE KKCLNSELWH ACAGPLVSLP TRGTRVVYFP QGHSDQVAAT TNKQVDAHLP  60
NYPSLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLTPQE QKETFLPMEL GLPSKQPTNY  120
FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFTLQPPAQE LIARDLHDVE WKFRHIFRGQ  180
PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLFLGIR RATRPQTVMP SSVLSSDSMH  240
IGLLAAAAHA ASTNSCFTVF YNPRASPSEF VIPLSKYIKA VFHTRVSVGM RFRMLFETEE  300
SSVRRYMGTI TGISDLDPVR WPNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP  360
SLFPLRLKRP WYPGASSMHD NRDESNSLMW LRGGAVEQGL QSMNFQNVGM FPWMQQRLDS  420
TVIGNDHNQQ YQAMLAAGSQ NLGSGDQLRQ QMMHFQQPFQ YVQQSGSHNP VLQLQQQAIQ  480
QSIPHNILQG QPQVSMENMP QHLLQQQFNN QTDEQAQQQQ NAYQDALKVQ NEQLHQSQQM  540
IVSSSSFPKT DLSDSSTKFS ASTTPRQNML GTLCPDGSGN LLSMSRAGHS MPTEQSPQQS  600
WAPKYAHGQA NAFAHSMSFP PFNEKDNAVE QENLNSDTHN PTLFGVNIES SGLLFPTSAP  660
SFATSSNDAD ISMPLGDSGL QSSLYGCMQD SSELLHSAGQ VDPPTPNNCT FVKVYKSGSV  720
GRSLDISRFS SYHELREELG QMFGIEGKLE DRLRSGWQLV FVDREDDVLL LGDDPWESFV  780
NNVWYIKILS PEDVHKMGHQ AVESFSPNTV HGYRNKNWKN SLLGPVGWPI LGSLPHLSIR  840
LHEDLFKLSK INGPLFSLKL GSQPVIVASS PEMTCQIFRQ HDDVFCNHIV TEAFGIMSYE  900
GVSRFFFSGG YAVESAKKNI GGKDCLQNRK YYMKSSRRAL TILDQCLTIA HIRQTQSHLT  960
VSGTLFDPYA AAKIIAFCSE SNSGDLRHAF RLFRHMPHRT TYIWNVMIRA FAERNESMRA  1020
LSLYNDMIQS GLLPNNYTFS FLLRACTDLS YLSMGLVLHC HAIRLGWEAY DFVQNGLIHL  1080
YVTCDSINPA RKLFDMSVYK DVVTWTALIN GYVKSSQVEV ARELFDEMPE KNAVSWSALI  1140
NGYVQVGLFS EALELFVDMQ VSGVLPNHAG IVGALTACAF LGALDQGRWI HAYVSRKGMK  1200
LDRVLGTALV DMYTKCGCVE TAHAVFNEMP SRDVFTFTSL ISGLANCGES ESAISLFASM  1260
QDEGIAPNEV TFICVLSACS RMGLVDEGLQ IFESMSNTFG IQPGVQHYGC LVDLLGRAGM  1320
LEEAKKVVRE IPMEPDSYVL GALLNACRVH GDVELGREMV ERLSGKSLDH SGVRVLLSNI  1380
YASANQWDDV TTLRKGMEEK KVRKVPGCSS VEVNGEVFEF VAGERSHVLM DEITLVSLAI  1440
DKHLKSFWID RDDDKLTE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein