PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024933.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GATA

Protein Properties

Length: 715aa MW: 78592 Da PI: 7.7106

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024933.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.6	7.1e-18	611	645	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ PCP024933.1 611 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 645 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence
MSLRPSARTE VRRNRYKVAV DADEGRRRRE DNMVEIRKSK REESLLKKRR EGLQAQQFAP 60 SLQPSNLEKK LESLPAMVAG VWSDDNSLQL ESTTQFRKLL SIERSPPIEE VIQSGVVPRF 120 VAFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIEQGAV PIFVKLLASP SDDVREQAVW 180 ALGNVAGDSP RCRDLVLSSG ALMPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV 240 KPALPALERL VHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCVRLV QLLLHPSPSV 300 LIPALRTVGN IVTGDDLQTQ CIINNGSLPC LLSLLTHNHK KSIKKEACWT ISNITAGNRD 360 QIQSVIEAGL IGPLVNLLQH AEFDIKKEAA WAISNATSGG TPDQIKYLVG EGCIKPLCDL 420 LVCPDPRIVT VCLEGLENIL KVGEAEKAVG NSEVNLYAQL VDDAEGLEKI ENLQSHDNTE 480 IYEKSVKILE TYWLEEDEET LPAGDGTQPG FRFGGSEVQK FLMRVKFGVK LRSSWSGSGA 540 SRVSGFSLVR CPLSSEMTRV IIGIVVGTEA KDLQNISYRM LDPSDKGSES EGMTIKTPDA 600 GSSEEGFKKT CADCGTSKTP LWRGGPAGPK SLCNACGIRS RKKRRAILGL NKENPNDKKG 660 KKNKQLGDGL KQRLLALGRE VLMQRSTVER QRRKLGEEEQ AAVLLMALSY GSVYA

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence

MSLRPSARTE VRRNRYKVAV DADEGRRRRE DNMVEIRKSK REESLLKKRR EGLQAQQFAP  60
SLQPSNLEKK LESLPAMVAG VWSDDNSLQL ESTTQFRKLL SIERSPPIEE VIQSGVVPRF  120
VAFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIEQGAV PIFVKLLASP SDDVREQAVW  180
ALGNVAGDSP RCRDLVLSSG ALMPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV  240
KPALPALERL VHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCVRLV QLLLHPSPSV  300
LIPALRTVGN IVTGDDLQTQ CIINNGSLPC LLSLLTHNHK KSIKKEACWT ISNITAGNRD  360
QIQSVIEAGL IGPLVNLLQH AEFDIKKEAA WAISNATSGG TPDQIKYLVG EGCIKPLCDL  420
LVCPDPRIVT VCLEGLENIL KVGEAEKAVG NSEVNLYAQL VDDAEGLEKI ENLQSHDNTE  480
IYEKSVKILE TYWLEEDEET LPAGDGTQPG FRFGGSEVQK FLMRVKFGVK LRSSWSGSGA  540
SRVSGFSLVR CPLSSEMTRV IIGIVVGTEA KDLQNISYRM LDPSDKGSES EGMTIKTPDA  600
GSSEEGFKKT CADCGTSKTP LWRGGPAGPK SLCNACGIRS RKKRRAILGL NKENPNDKKG  660
KKNKQLGDGL KQRLLALGRE VLMQRSTVER QRRKLGEEEQ AAVLLMALSY GSVYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	642	662	KKRRAILGLNKENPNDKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	6e-50	GATA family protein