PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 499aa    MW: 53156.3 Da    PI: 8.1578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024779.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-124973327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 ++ C++++rtG+C yG+rC+++H++
  PCP024779.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73
                 689********************96 PP

2zf-CCCH39.49.9e-13121145327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C++++rtGtCk+G++Ck++H++
  PCP024779.1 121 QPVCQYYMRTGTCKFGASCKYHHPK 145
                  689********************96 PP

3zf-CCCH36.58.4e-12165191127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+++ +tG+Ck+G++CkF+H++
  PCP024779.1 165 PGERDCSYYVKTGQCKFGATCKFHHPQ 191
                  5789*********************97 PP

4zf-CCCH38.81.5e-12324350127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++rtG Ck+G++C+++H+p
  PCP024779.1 324 PGQPECQYYMRTGDCKFGSSCRYHHPP 350
                  5789*********************97 PP

5zf-CCCH34.43.7e-11373395426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +lC ++++ G Ck+G+ CkF H+
  PCP024779.1 373 PLCTHYQQRGACKFGSACKFDHP 395
                  89********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MERYGRTAEG SQSNPSPEWN LPGSETGLEE SMWPLGLRPG ESYPERSDEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSVCGA FVFVLILCGS RDIVGFVCRF DDQVIGAART GGLEYPERAG  120
QPVCQYYMRT GTCKFGASCK YHHPKQGGSS DSPGSLNYYG YPLRPGERDC SYYVKTGQCK  180
FGATCKFHHP QPAGIQLPGP SPAPQVSPVP ATHTLYQNVQ SPSVSSQQYG VVFARPPLTY  240
VPSPYDQVLL SQGTIPFPGW NPYQALASQL PSPSTQSGVG ARTLYTQLSP SAPAFTGMYQ  300
PMPLASSLGL PTTSQKEQIF PERPGQPECQ YYMRTGDCKF GSSCRYHHPP EVIQSKTTVL  360
LSSSGLPSRL GAPLCTHYQQ RGACKFGSAC KFDHPIGTLS YSPSASSLAD MPVAPYPVGS  420
SIGTLAPSSS SSELRPELSS SSGKDLVSAR MSSSLSTSSL SVGSTVSKGG VTPAGVQQSS  480
QGSGPSSGSG NSTESHSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-123C3H family protein