PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP024779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 499aa MW: 53156.3 Da PI: 8.1578 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 8.7e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG+rC+++H++ PCP024779.1 49 EADCSYYLRTGICGYGSRCRYNHPR 73 689********************96 PP | |||||||
2 | zf-CCCH | 39.4 | 9.9e-13 | 121 | 145 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ PCP024779.1 121 QPVCQYYMRTGTCKFGASCKYHHPK 145 689********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.4e-12 | 165 | 191 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +tG+Ck+G++CkF+H++ PCP024779.1 165 PGERDCSYYVKTGQCKFGATCKFHHPQ 191 5789*********************97 PP | |||||||
4 | zf-CCCH | 38.8 | 1.5e-12 | 324 | 350 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p PCP024779.1 324 PGQPECQYYMRTGDCKFGSSCRYHHPP 350 5789*********************97 PP | |||||||
5 | zf-CCCH | 34.4 | 3.7e-11 | 373 | 395 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC ++++ G Ck+G+ CkF H+ PCP024779.1 373 PLCTHYQQRGACKFGSACKFDHP 395 89********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence |
MERYGRTAEG SQSNPSPEWN LPGSETGLEE SMWPLGLRPG ESYPERSDEA DCSYYLRTGI 60 CGYGSRCRYN HPRDRSVCGA FVFVLILCGS RDIVGFVCRF DDQVIGAART GGLEYPERAG 120 QPVCQYYMRT GTCKFGASCK YHHPKQGGSS DSPGSLNYYG YPLRPGERDC SYYVKTGQCK 180 FGATCKFHHP QPAGIQLPGP SPAPQVSPVP ATHTLYQNVQ SPSVSSQQYG VVFARPPLTY 240 VPSPYDQVLL SQGTIPFPGW NPYQALASQL PSPSTQSGVG ARTLYTQLSP SAPAFTGMYQ 300 PMPLASSLGL PTTSQKEQIF PERPGQPECQ YYMRTGDCKF GSSCRYHHPP EVIQSKTTVL 360 LSSSGLPSRL GAPLCTHYQQ RGACKFGSAC KFDHPIGTLS YSPSASSLAD MPVAPYPVGS 420 SIGTLAPSSS SSELRPELSS SSGKDLVSAR MSSSLSTSSL SVGSTVSKGG VTPAGVQQSS 480 QGSGPSSGSG NSTESHSSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-123 | C3H family protein |