PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024761.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 721aa MW: 78608.2 Da PI: 5.0707

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024761.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.7e-30	85	169	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea PCP024761.1 85 RWPRQETLALLKIRSDMDVAFRDATLKGPLWEDVSRKLAELGYQRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 169 8*******************************************************************866665..****985 PP
2	trihelix	107.1	1.2e-33	471	556	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a PCP024761.1 471 RWPKAEVLALIKLRSGLESRYQDAGPKGPLWEEISAGMGRIGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 556 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MQQPAAGGAG GSQTHYGGAG EMSAAEPAAA EQGQLVVEAA SPISSRPPAS AAVNLDELMT 60 LSGAAAAAED ALADRGGGGG SSGNRWPRQE TLALLKIRSD MDVAFRDATL KGPLWEDVSR 120 KLAELGYQRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS YKFFSELEAL HGTAAATTAN 180 VSASPAVHVS SPNPVSVGFG SVTNPMPISS FRMPQQQQPP PATAIPIIPS SQPTATPMDF 240 NFSSNSSSTS PGTDDEDDDD DVEGERSSRK RKRGSASTST GISGGGSTRK MMNFFEVLMK 300 QVMQKQESMQ QRFLEVIEKR EQDRTIREEA WKRQEMARLT REQELMSQER AISASRDAAI 360 ISFLQKITGQ TIQLPPPVNV HAAPPPPVPP SVSVVTPLPQ TTPQPTTQTY QTPQQQQPQP 420 PQQMQQVRHV QQPQNVQPVM AVPEQQVPPT AQENIASGGG GGSSEPASSS RWPKAEVLAL 480 IKLRSGLESR YQDAGPKGPL WEEISAGMGR IGYNRSSKRC KEKWENINKY FKKVKESNKK 540 RPEDAKTCPY FHELDALYRK RVLGGGSTGG SSSSLGNMLE QPPQQEQVVA GSENKNADDS 600 TNVETNLRAN LFGEGTAEAA KKPEDIVKEL MEVHDHQQVL QQGHPQHFGV DDCNRMEEAD 660 SDNLMDQEEE DMEDEDMDEE DDEETEQERK MAYKIEFQKQ NTGPSSNGGG NGAPSFLAMV 720 Q

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MQQPAAGGAG GSQTHYGGAG EMSAAEPAAA EQGQLVVEAA SPISSRPPAS AAVNLDELMT  60
LSGAAAAAED ALADRGGGGG SSGNRWPRQE TLALLKIRSD MDVAFRDATL KGPLWEDVSR  120
KLAELGYQRN AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS YKFFSELEAL HGTAAATTAN  180
VSASPAVHVS SPNPVSVGFG SVTNPMPISS FRMPQQQQPP PATAIPIIPS SQPTATPMDF  240
NFSSNSSSTS PGTDDEDDDD DVEGERSSRK RKRGSASTST GISGGGSTRK MMNFFEVLMK  300
QVMQKQESMQ QRFLEVIEKR EQDRTIREEA WKRQEMARLT REQELMSQER AISASRDAAI  360
ISFLQKITGQ TIQLPPPVNV HAAPPPPVPP SVSVVTPLPQ TTPQPTTQTY QTPQQQQPQP  420
PQQMQQVRHV QQPQNVQPVM AVPEQQVPPT AQENIASGGG GGSSEPASSS RWPKAEVLAL  480
IKLRSGLESR YQDAGPKGPL WEEISAGMGR IGYNRSSKRC KEKWENINKY FKKVKESNKK  540
RPEDAKTCPY FHELDALYRK RVLGGGSTGG SSSSLGNMLE QPPQQEQVVA GSENKNADDS  600
TNVETNLRAN LFGEGTAEAA KKPEDIVKEL MEVHDHQQVL QQGHPQHFGV DDCNRMEEAD  660
SDNLMDQEEE DMEDEDMDEE DDEETEQERK MAYKIEFQKQ NTGPSSNGGG NGAPSFLAMV  720
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-47	Trihelix family protein