PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024589.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 407aa MW: 45359 Da PI: 8.3228

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024589.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.5e-18	189	241	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k PCP024589.1 189 KKRLNLEQVKTLEKSFEIGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 241 4568889*********************************************9 PP
2	HD-ZIP_I/II	128.4	3e-41	187	277	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++L++++dalk++n++L++++++L++el PCP024589.1 187 EKKKRLNLEQVKTLEKSFEIGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLRNKFDALKADNDALQAHNKKLQAEL 277 69**************************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MLSKDVSIKL LWRCLGLALI LHQTRRLLPS AWNGGRSPRT GRSESCLETA APCVSGESPE 60 SWSLDPVSVV LVIVLRGRSM CDAILVAIDL RQCEGGQLVF WGFGSMVRVR VWLGGFVVGG 120 RSSQFGGHGE LERLGNRGGG MPFMMKRSLS FSGVENNRCH HHDQEAALHG GGGGDDDLSD 180 DGSQMGEKKK RLNLEQVKTL EKSFEIGNKL EPERKMQLAK ALGLQPRQIA IWFQNRRARW 240 KTKQLEKDYD VLRNKFDALK ADNDALQAHN KKLQAELLAL KSKDSSNEGG FNFKKETDQG 300 SWSNGSENSS DHHHHHHLNF EISRTTATTS SPPSDSPQMN GKNLFPPSSS SLRSASTTHL 360 LQGSSRSDLQ SLKFDQMIQD EGLCSMFNGI DQEQQGFWPW PEQQHFH

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MLSKDVSIKL LWRCLGLALI LHQTRRLLPS AWNGGRSPRT GRSESCLETA APCVSGESPE  60
SWSLDPVSVV LVIVLRGRSM CDAILVAIDL RQCEGGQLVF WGFGSMVRVR VWLGGFVVGG  120
RSSQFGGHGE LERLGNRGGG MPFMMKRSLS FSGVENNRCH HHDQEAALHG GGGGDDDLSD  180
DGSQMGEKKK RLNLEQVKTL EKSFEIGNKL EPERKMQLAK ALGLQPRQIA IWFQNRRARW  240
KTKQLEKDYD VLRNKFDALK ADNDALQAHN KKLQAELLAL KSKDSSNEGG FNFKKETDQG  300
SWSNGSENSS DHHHHHHLNF EISRTTATTS SPPSDSPQMN GKNLFPPSSS SLRSASTTHL  360
LQGSSRSDLQ SLKFDQMIQD EGLCSMFNGI DQEQQGFWPW PEQQHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	244	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-63	HD-ZIP family protein