PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024516.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 336aa    MW: 37415.4 Da    PI: 4.9841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024516.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07552247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+   +l+ +a + +  +   +W   ar +g g++ +++k ++q++
      PCP024516.1  5 GSWTARQNKLFENALAVYDEDtpeRWYNLARAVG-GKSVEEVKRHYQML 52
                     79********************************.************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MASSGSWTAR QNKLFENALA VYDEDTPERW YNLARAVGGK SVEEVKRHYQ MLVEDVKKIE  60
AGEVPLPNYR KSGGGNTKSY SMDIEEQRAQ THPTHTYTLP RNDMLPPLSS LTNSSVSSSD  120
LDTEVWLLAF LVWDENGFGW RIILGSASIA RRKILAEMGY EFIVVTADID EKSIRTEKPE  180
ELVLVLAKAK ADAIISKLQS INNQEKDADP TIVIAADTAE AISQKLPVGD YIKDAEPTLL  240
VTSDQVVVYE GVIREKPSSK EEARQFLKDY SGGHAATVGS VHVTNLKTGF SKGEWDRVEI  300
YFHKIPDEVI EKLVGTTDSV MGLPKDLTRR LLKEAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-30MYB_related family protein