PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024436.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 1323aa MW: 148922 Da PI: 5.9418

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024436.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.2	1.2e-14	801	858	2	64
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 W+++e laL+++r+ me+++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ +i PCP024436.1 801 WSNDELLALLRIRSTMENWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNI 858 ******************998.....9****************************9875 PP
2	trihelix	93.5	2.1e-29	1170	1263	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ ++g k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql PCP024436.1 1170 RWPRDEVLALINLRCSLFNNGGSGGdqdkdggvvMKAPLWERISQGMFEIGYKRSSKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 1263 8***************9999875566788888*****************************************8.9999******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 1323 aa Download sequence
MWLKPAPSCF SMLKPYCSAT PPPPPPPTTA FKPLMATKTT EESDVGIFCY ISQLPGFRGV 60 LKQRYSDFMV NEVDKMGNVV HLTNLDAPVE AVKESGTTTS DGASKDYTAE IESFRALVDP 120 NDAERLETFI NQINSSSDDG VMPIVLSPDY DKSHRTAVHN FFKQHFKFLV TDTVDGPDAS 180 SKCIRVRINS GGQNSRGRNS RKRKERGDKP FDSRGSEDWS EHVGKFLRFH LYKENKDTQE 240 ALGVIGKMLG VQPRSFGFAG TKDKRAVTTQ RVTVFKKLAS KLAALNDRLI GIKVGDFCYV 300 TEGLVLGQLL GNRFTITLSD LEAVLCQLTI LELHYSEESG NLLNVITEAR EYYKETNDIE 360 GTLRKLPRHL VSERAILQCL KKCPGNYLQA LKAIPRTLRM MYVHSYQSYL WNHAASMRVK 420 KYGTDRVVLG DLVFCKGNET EKVTEVVTSE CIDENSDYML DPNDLGDIAE TNLPEEKLNL 480 VKAVTAEDIQ SGNYTIEDVV LPMPGSRVIF PENDIADVFH DLAKKDAISL TESVHNVNEF 540 SITSVTGNYR RVFQKPMDFE WEILKYVDGN VPLVDTDLDK ISKAKPAKVD KEDPSSVNGD 600 GSLHDSAKQS EYIDNDIGDK GEKVPEVGSL GDTNPQETQM ALNEQTKGMV KRNTHTLSHK 660 THTNMFDGVP AEQLHQLIAS SRTSLPLPLP LPLSSFPPPP PNNNINTFHV PAGAPFDPYN 720 NNNDPSHLHH QLLQIQPHLL HQNHQLLQLH RQSTATPENL EEEEEHSSTV SISINNNLEI 780 ERDRSSSVPA SSDVPISSDP WSNDELLALL RIRSTMENWF PEFTWEHVSR KLAELGFKRS 840 AEKCKEKFEE ESRYFNNIYF TKNYRFLSDL EQICQGGGDA HQRSPDDYDH RNPDDHQEAP 900 GDKNNKKEMV EKPSDEGDHP DSTRNETLVE DNIGVISNEP LNLQEHNKKE VVVETRPTNN 960 NNKRKRQRRF EMLKGFCEDI VNRMMAQQEE MHNKLLEEMV KRNEEKIAKE EAWKKQETDR 1020 MNKELELMAR EQAVAGDRQA TIIKFLKKFT SSSSNSSTST SSSPIQVQNP TLPTCRDVSG 1080 RKELDRHQEK ENNPTTPSSL TESTLAPQSP TSSTLAPTPL PVPTVTISLS TTTNTTVALA 1140 PPENPSSEDV IINAQNPSSI SHDKQDLGKR WPRDEVLALI NLRCSLFNNG GSGGDQDKDG 1200 GVVMKAPLWE RISQGMFEIG YKRSSKRCKE KWENINKYFR KTKDVNKKRS LDSRTCPYFH 1260 QLSTLYNQGM LVSPSDQAPE NRPASPENHS LGDGDSTKHD EGEKNNNMVK QAPTPTPAFD 1320 FEF

Sequence ? help Back to Top

Protein Sequence Length: 1323 aa Download sequence

MWLKPAPSCF SMLKPYCSAT PPPPPPPTTA FKPLMATKTT EESDVGIFCY ISQLPGFRGV  60
LKQRYSDFMV NEVDKMGNVV HLTNLDAPVE AVKESGTTTS DGASKDYTAE IESFRALVDP  120
NDAERLETFI NQINSSSDDG VMPIVLSPDY DKSHRTAVHN FFKQHFKFLV TDTVDGPDAS  180
SKCIRVRINS GGQNSRGRNS RKRKERGDKP FDSRGSEDWS EHVGKFLRFH LYKENKDTQE  240
ALGVIGKMLG VQPRSFGFAG TKDKRAVTTQ RVTVFKKLAS KLAALNDRLI GIKVGDFCYV  300
TEGLVLGQLL GNRFTITLSD LEAVLCQLTI LELHYSEESG NLLNVITEAR EYYKETNDIE  360
GTLRKLPRHL VSERAILQCL KKCPGNYLQA LKAIPRTLRM MYVHSYQSYL WNHAASMRVK  420
KYGTDRVVLG DLVFCKGNET EKVTEVVTSE CIDENSDYML DPNDLGDIAE TNLPEEKLNL  480
VKAVTAEDIQ SGNYTIEDVV LPMPGSRVIF PENDIADVFH DLAKKDAISL TESVHNVNEF  540
SITSVTGNYR RVFQKPMDFE WEILKYVDGN VPLVDTDLDK ISKAKPAKVD KEDPSSVNGD  600
GSLHDSAKQS EYIDNDIGDK GEKVPEVGSL GDTNPQETQM ALNEQTKGMV KRNTHTLSHK  660
THTNMFDGVP AEQLHQLIAS SRTSLPLPLP LPLSSFPPPP PNNNINTFHV PAGAPFDPYN  720
NNNDPSHLHH QLLQIQPHLL HQNHQLLQLH RQSTATPENL EEEEEHSSTV SISINNNLEI  780
ERDRSSSVPA SSDVPISSDP WSNDELLALL RIRSTMENWF PEFTWEHVSR KLAELGFKRS  840
AEKCKEKFEE ESRYFNNIYF TKNYRFLSDL EQICQGGGDA HQRSPDDYDH RNPDDHQEAP  900
GDKNNKKEMV EKPSDEGDHP DSTRNETLVE DNIGVISNEP LNLQEHNKKE VVVETRPTNN  960
NNKRKRQRRF EMLKGFCEDI VNRMMAQQEE MHNKLLEEMV KRNEEKIAKE EAWKKQETDR  1020
MNKELELMAR EQAVAGDRQA TIIKFLKKFT SSSSNSSTST SSSPIQVQNP TLPTCRDVSG  1080
RKELDRHQEK ENNPTTPSSL TESTLAPQSP TSSTLAPTPL PVPTVTISLS TTTNTTVALA  1140
PPENPSSEDV IINAQNPSSI SHDKQDLGKR WPRDEVLALI NLRCSLFNNG GSGGDQDKDG  1200
GVVMKAPLWE RISQGMFEIG YKRSSKRCKE KWENINKYFR KTKDVNKKRS LDSRTCPYFH  1260
QLSTLYNQGM LVSPSDQAPE NRPASPENHS LGDGDSTKHD EGEKNNNMVK QAPTPTPAFD  1320
FEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	963	968	KRKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	4e-42	Trihelix family protein