PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024388.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 307aa MW: 32859.9 Da PI: 7.3864

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024388.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100	2.2e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e PCP024388.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +++ PCP024388.1 102 AVLKGQS 108 9988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGQSIT PITSEAAADG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSVVK PKTNKVDSGS GSGCGCGSGA 180 DDSAKPSSTG CCGNEFNRST SHESSLSHQS EAAANVDGDS KESESMISSE TAEAELFSRA 240 EPEPAHKRRE PVQDGELALE LTLGLEPPSR GHHVVPVKKR RIEAEYGGSS SADDGACKME 300 LGLDYVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-92	LBD family protein