PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024270.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 880aa MW: 98175.9 Da PI: 7.9557

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024270.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.3	6.9e-24	150	256	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...ldgrs 88 f k+ltpsd++++g +++pk+ aee+ ++++ ++l+++d++g++W +++iyr++++r++lt+GW F+ a++L +gD ++F l+ + PCP024270.1 150 FRKTLTPSDTSSHGGFSVPKRQAEEClpaldmsQQPPV--QDLVVKDLQGNEWHFRHIYRGQPRRHLLTSGWTTFATAKKLVSGDECIFArhaLSLGE 245 89***************************7544444..48*********************************************965444349 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+++r+ PCP024270.1 246 NGELRVGIHRA 256 99999999886 PP
2	Auxin_resp	92.2	8.6e-31	281	365	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 a ha+st+++F+v+Y+P++s++ F++++++++k+ ++ +s+GmRf+m e+e+++ ++ Gt+++++d+d +rWpnS+Wr Lk PCP024270.1 281 ALHAISTGTMFTVYYRPWTSPAAFIIPYDRYMKSAEIDYSIGMRFRMYSEGEECADQKKrlEGTIIDIEDYDYLRWPNSEWRRLK 365 689************************************************97655445*******************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 880 aa Download sequence
MVPRTAGVEG PPPTATVNAG ESSGCSDAAA LPAANNNQGE KDDLYTHLWY ACAGANVYVP 60 RPGEKVFYFL QGHMEQVEAY ANQDGEMEMP RYNLPPKILC NVVCVQLKAE VHTDEVYAQI 120 TLLPVTKQDQ LSVEEENTPP LPRRTSTLSF RKTLTPSDTS SHGGFSVPKR QAEECLPALD 180 MSQQPPVQDL VVKDLQGNEW HFRHIYRGQP RRHLLTSGWT TFATAKKLVS GDECIFARHA 240 LSLGENGELR VGIHRATKTQ DTASASLISG HSMQHGILAS ALHAISTGTM FTVYYRPWTS 300 PAAFIIPYDR YMKSAEIDYS IGMRFRMYSE GEECADQKKR LEGTIIDIED YDYLRWPNSE 360 WRRLKVRLDT ASDTCFHSER LSPWNIVPLK PNKRARLPGL PSPGISSLAR NGSLLISVES 420 TRPRKKKVFQ GQETSDPPAH GPRTPKQLLQ FIPPPNPDWD YTQLGLENNL NVPMNDSLYQ 480 CPGSPKAPSL TNQWPPKFGF GVFDSGACKR SMSVPNIWSS GSQKLRTFEL RNETQSPLVQ 540 PKTTMLFGVN IVTSYPELPS PQVANSIELY SPCSTPPTYH SSVSETIQLS ETSKSISGVR 600 SEKQCRKCCS VSNRSCIKVL KHGAPVGRSI DLTHFDGYNE LICELDQMFD FKGSLIGGSS 660 GWQYLSKDSL RGHKCLSAHM RLRARQRTHG TGKHVYLKHR CALCARPITS VPKFPPPSST 720 NISALVNVAT PALNFRFSPH PIRRRNDLRK SQTAARSQFS SNPQSNEQEE DDPDAQVQDL 780 VVPQHWLTPS KALEESEWLR ATLHKWLDDE YCPEPTNAEI SKVAAQSYYD SLLGKQTDLG 840 EILLKMAREL ESISYQESFH GAFSSANAAV NLISQRIEQA

Sequence ? help Back to Top

Protein Sequence Length: 880 aa Download sequence

MVPRTAGVEG PPPTATVNAG ESSGCSDAAA LPAANNNQGE KDDLYTHLWY ACAGANVYVP  60
RPGEKVFYFL QGHMEQVEAY ANQDGEMEMP RYNLPPKILC NVVCVQLKAE VHTDEVYAQI  120
TLLPVTKQDQ LSVEEENTPP LPRRTSTLSF RKTLTPSDTS SHGGFSVPKR QAEECLPALD  180
MSQQPPVQDL VVKDLQGNEW HFRHIYRGQP RRHLLTSGWT TFATAKKLVS GDECIFARHA  240
LSLGENGELR VGIHRATKTQ DTASASLISG HSMQHGILAS ALHAISTGTM FTVYYRPWTS  300
PAAFIIPYDR YMKSAEIDYS IGMRFRMYSE GEECADQKKR LEGTIIDIED YDYLRWPNSE  360
WRRLKVRLDT ASDTCFHSER LSPWNIVPLK PNKRARLPGL PSPGISSLAR NGSLLISVES  420
TRPRKKKVFQ GQETSDPPAH GPRTPKQLLQ FIPPPNPDWD YTQLGLENNL NVPMNDSLYQ  480
CPGSPKAPSL TNQWPPKFGF GVFDSGACKR SMSVPNIWSS GSQKLRTFEL RNETQSPLVQ  540
PKTTMLFGVN IVTSYPELPS PQVANSIELY SPCSTPPTYH SSVSETIQLS ETSKSISGVR  600
SEKQCRKCCS VSNRSCIKVL KHGAPVGRSI DLTHFDGYNE LICELDQMFD FKGSLIGGSS  660
GWQYLSKDSL RGHKCLSAHM RLRARQRTHG TGKHVYLKHR CALCARPITS VPKFPPPSST  720
NISALVNVAT PALNFRFSPH PIRRRNDLRK SQTAARSQFS SNPQSNEQEE DDPDAQVQDL  780
VVPQHWLTPS KALEESEWLR ATLHKWLDDE YCPEPTNAEI SKVAAQSYYD SLLGKQTDLG  840
EILLKMAREL ESISYQESFH GAFSSANAAV NLISQRIEQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-139	ARF family protein