PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 553aa    MW: 59916.6 Da    PI: 8.9707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024253.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-11128152327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++C +++rtG+C yG+rC+++H++
  PCP024253.1 128 VPNCVYYMRTGFCGYGGRCRYNHPR 152
                  689********************96 PP

2zf-CCCH35.61.6e-11173197327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++t tCk+G++CkF+H++
  PCP024253.1 173 EPICQYYLKTATCKFGASCKFHHPK 197
                  799********************96 PP

3zf-CCCH36.11.1e-11218243227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C+++++tG+Ck+G +CkF+H++
  PCP024253.1 218 GENECSYYLKTGQCKFGITCKFHHPQ 243
                  6789********************97 PP

4zf-CCCH35.81.3e-11377400427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   +C+++++tG CkyG++C+++H++
  PCP024253.1 377 LECQYYLKTGDCKYGASCRYHHPR 400
                  58********************96 PP

5zf-CCCH361.1e-11421445226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +  +C f++++G+Ck+G++CkF H+
  PCP024253.1 421 GVQPCTFYLQNGQCKFGSTCKFDHP 445
                  6789********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MVYIGGSDEE ERVEVKSMAL GYEKAKPLHN FNLSWVNWRS SAQRIENSPA VMTRVGMVYG  60
FWDFRDAVAA GVQKPNTRRF VMDLYGRSPA RNGSNQEWSP AAGETGLEEQ MWHLGLTSSE  120
SYPERPAVPN CVYYMRTGFC GYGGRCRYNH PRDRAAVVAA VRATGDYPER AGEPICQYYL  180
KTATCKFGAS CKFHHPKHGA GSLSRAPLNI YGYPLRPGEN ECSYYLKTGQ CKFGITCKFH  240
HPQPAGTAIP ASAPQFYPPV QSPSVALAEQ YGGASTSLRV ARPPLLPGSY VQGAYGPVLI  300
QPGVVPIQGW SPYSAPLSPV LSPGAQHTVG ATSLYGVTQL SSPTHGLARP YTSIPSSIGP  360
SSSNPSEQVF PERPGELECQ YYLKTGDCKY GASCRYHHPR DRTVPRITCL LSPMGLPLRP  420
GVQPCTFYLQ NGQCKFGSTC KFDHPVQNMR YNPSVSSLVD MPVAPYPVGS LLATLAPSSS  480
SSDLRPELLS ASKMDTYSAR VPSSGNASSS SVGLIFSQSG SVSLSDVQLS TQTSSPLSNS  540
RSTRPVGELR RSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.10.0C3H family protein