PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023942.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 171aa MW: 18977.1 Da PI: 10.2238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023942.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H PCP023942.1 39 FVCKTCNREFPSFQALGGHRASH 61 89**********99999998887 PP
2	zf-C2H2	10.7	0.0016	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H PCP023942.1 90 HECPICGLEFAIGQALGGHMRRH 112 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MKRSRQDETL DLVNCLMLLS REPDSSPIKH ENTKKDRVFV CKTCNREFPS FQALGGHRAS 60 HKKPKLMPGG AANLLHLAQS PGSLVKPKTH ECPICGLEFA IGQALGGHMR RHRDVIQAAA 120 VRTQTSPPMP VLKKSNSSKR VSCLNLDLNL DLHLAPPGYH QYDLTKLQLI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-37	C2H2 family protein