PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023803.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 312aa MW: 35006.9 Da PI: 6.4993

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023803.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.1	6.9e-39	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i+++q+ +e kael+ + PCP023803.1 31 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDQPDKDEAMRTIIFQSDVRANDPVGGCYRIIREMQRLIEYNKAELDIVL 128 7*********************************************************************************************9887 PP DUF260 99 ee 100 ++ PCP023803.1 129 HQ 130 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MSSSGHSHNH THHILTTTTT PSTKGNGNTQ ACAACKYQRR KCAPDCILAP YFPHDRQRQF 60 LNAHKLFGVS NITKIIKHLD QPDKDEAMRT IIFQSDVRAN DPVGGCYRII REMQRLIEYN 120 KAELDIVLHQ LAICTAQAQV HQQQHQNPIQ MPEIGDQNTC DLLINGDPLS LCGNPMGHFH 180 YIQQPHPPHH AVALQQEQPH EQQQLPYVFV QNNANSNNNS DNNNGGPHVH PHHQHLHEDV 240 SMWAMQDSMS SLDIKQCGGG MNGIANGCED LKPFLDQMGC GDDHERNNGE VVDINGDHQH 300 SEEALLRVDR AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-54	LBD family protein