PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023467.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 369aa MW: 40797 Da PI: 6.8735

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023467.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	196	250	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqN+Ra+ k PCP023467.1 196 RKKLRLSKEQSAFLEESFKEHHTLDPKQKLALAKQLSLRPRQVEVWFQNKRARTK 250 788899***********************************************98 PP
2	HD-ZIP_I/II	124.4	5.4e-40	196	286	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L l+prqv+vWFqn+RARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PCP023467.1 196 RKKLRLSKEQSAFLEESFKEHHTLDPKQKLALAKQLSLRPRQVEVWFQNKRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 286 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MELCLSLGGH EEPAERSDQN TTTTTKTTEF CMSLSIGPSC AAGTTSTPHP PPRHEAAAAD 60 KKQDDDDGDH IHVDDRVPLQ LDLLLWPTSP CNRIQNAGVL SMNVINRVEE VVAAASSTHT 120 NSGSSSFQIM DIGSNNHSKG SAGDDLNNNY HNVYNYNRKA HSAEAGDDEG ERASNSRVGS 180 DEEEDDIING NTSTSRKKLR LSKEQSAFLE ESFKEHHTLD PKQKLALAKQ LSLRPRQVEV 240 WFQNKRARTK LKQTEVDCEF LKRCCETLTE ENRRLNKELQ ELRALKATHH SNPFSMQSPA 300 TTLTMCPSCE RTATTANPAS KTTNNTNNNN NNKVESTSAT KVQAAKFPLK RPSFYPFFQP 360 KSHPSSAAS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MELCLSLGGH EEPAERSDQN TTTTTKTTEF CMSLSIGPSC AAGTTSTPHP PPRHEAAAAD  60
KKQDDDDGDH IHVDDRVPLQ LDLLLWPTSP CNRIQNAGVL SMNVINRVEE VVAAASSTHT  120
NSGSSSFQIM DIGSNNHSKG SAGDDLNNNY HNVYNYNRKA HSAEAGDDEG ERASNSRVGS  180
DEEEDDIING NTSTSRKKLR LSKEQSAFLE ESFKEHHTLD PKQKLALAKQ LSLRPRQVEV  240
WFQNKRARTK LKQTEVDCEF LKRCCETLTE ENRRLNKELQ ELRALKATHH SNPFSMQSPA  300
TTLTMCPSCE RTATTANPAS KTTNNTNNNN NNKVESTSAT KVQAAKFPLK RPSFYPFFQP  360
KSHPSSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	201	SRKKLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-58	HD-ZIP family protein