PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022629.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ZF-HD

Protein Properties

Length: 388aa MW: 42377.5 Da PI: 7.8233

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022629.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	53.7	4.7e-17	133	165	2	35
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee 35 ++vrYkeClkNhAa++Gg+a+DGCgEfmps gee PCP022629.1 133 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEE 165 579**************************9.443 PP
2	ZF-HD_dimer	71.6	1.3e-22	166	210	15	60
ZF-HD_dimer 15 aslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 a++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR++ve e PCP022629.1 166 AAMGGTATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKKVEGE 210 89************9.999******************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MMDHLSSQEG EIPITIPSPI PILINTSFGS GGHGHLIHHH HQQRPHDPTS AAAARAPVPQ 60 NNNKHSNFLP SSAVVPQNQI PPNTNGSIPM PPSLDHSHEE EVVEEVEHHV NNANANVVPY 120 KYSTFNNKKV GHNGVRYKEC LKNHAAAMGG TATDGCGEFM PSGEEAAMGG TATDGCGEFM 180 PSGEEGTIEA LNCSACNCHR NFHRKKVEGE QQQLSSWDHN FHHTINRAVG IGSRKFLLNH 240 GGGGGGGHHK SLLAPPQYPH QPQMLMPNYN MGMGMLGMVG SIPSDQSDEP EDHHHLHHGG 300 GGAVGSRPPV GQVAKKRFRT KFTQEQKEKM LNFAEKVGWK IQKQEDSFVQ NFCQEIGVKR 360 RVLKVWMHNN KHNLANKIKP PPPSPSAP

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MMDHLSSQEG EIPITIPSPI PILINTSFGS GGHGHLIHHH HQQRPHDPTS AAAARAPVPQ  60
NNNKHSNFLP SSAVVPQNQI PPNTNGSIPM PPSLDHSHEE EVVEEVEHHV NNANANVVPY  120
KYSTFNNKKV GHNGVRYKEC LKNHAAAMGG TATDGCGEFM PSGEEAAMGG TATDGCGEFM  180
PSGEEGTIEA LNCSACNCHR NFHRKKVEGE QQQLSSWDHN FHHTINRAVG IGSRKFLLNH  240
GGGGGGGHHK SLLAPPQYPH QPQMLMPNYN MGMGMLGMVG SIPSDQSDEP EDHHHLHHGG  300
GGAVGSRPPV GQVAKKRFRT KFTQEQKEKM LNFAEKVGWK IQKQEDSFVQ NFCQEIGVKR  360
RVLKVWMHNN KHNLANKIKP PPPSPSAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	5e-61	ZF-HD family protein