PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP022302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19056.9 Da PI: 8.8418 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr g+lKKA+EL +LCdaevaviifs+tg+l+e+ss PCP022302.1 9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGRLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 64.7 | 3.4e-22 | 86 | 155 | 12 | 81 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 + +++ ++el++Lk+e+ nLq++q +llG++L+ LslkeLqqLeqqL+++l ++++K++ll+eq+e+++ PCP022302.1 86 EIQKQDSKELDNLKDEYANLQKKQLRLLGKELTGLSLKELQQLEQQLNEGLLAVKERKEQLLMEQLEQSR 155 44677899***********************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGRLFEFSSA 60 GMKQTLSRYN KCLDSSEDAP EEGKAEIQKQ DSKELDNLKD EYANLQKKQL RLLGKELTGL 120 SLKELQQLEQ QLNEGLLAVK ERKEQLLMEQ LEQSRIQVCG STKVAPSLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 6e-52 | MIKC_MADS family protein |