PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 169aa    MW: 19056.9 Da    PI: 8.8418
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022302.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRr g+lKKA+EL +LCdaevaviifs+tg+l+e+ss
  PCP022302.1  9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGRLFEFSS 59
                 79***********************************************96 PP

2K-box64.73.4e-22861551281
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                  + +++ ++el++Lk+e+ nLq++q +llG++L+ LslkeLqqLeqqL+++l  ++++K++ll+eq+e+++
  PCP022302.1  86 EIQKQDSKELDNLKDEYANLQKKQLRLLGKELTGLSLKELQQLEQQLNEGLLAVKERKEQLLMEQLEQSR 155
                  44677899***********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGRLFEFSSA  60
GMKQTLSRYN KCLDSSEDAP EEGKAEIQKQ DSKELDNLKD EYANLQKKQL RLLGKELTGL  120
SLKELQQLEQ QLNEGLLAVK ERKEQLLMEQ LEQSRIQVCG STKVAPSLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-52MIKC_MADS family protein