PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022177.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 353aa    MW: 39136.3 Da    PI: 9.9708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022177.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61e-151690171
     trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr 71
                 +Wt++e +aLi ++++++ +l+r++lk ++W++v++ +          ++++qC++k+e+l++r++ +ke+++ +
  PCP022177.1 16 CWTRDESHALISLYKDRWLALGRSNLKSADWDSVASSVndrcPLVSPPKTAIQCRHKMEKLRRRFRTEKERASTH 90
                 8*************************************6433333448999*******************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MASPTEPKPR KFPPPCWTRD ESHALISLYK DRWLALGRSN LKSADWDSVA SSVNDRCPLV  60
SPPKTAIQCR HKMEKLRRRF RTEKERASTH IGPAAFFSSF DLFQPMIDLE CNSPLVFGSN  120
PDPENRITVE YGGGFRVRND ESFRYLADSD PNLSDPDETT SKGSGFGGGF RVKNPVRGPN  180
SGVSAGFDRY GSRGSDGGSG FPVKSLGDRN FWPSDFRSKS YGKSNDKFNP KLISKRSGSN  240
GVGSGSRFNQ KFKGSLHSNG VGIEDLGGSS SGKGMDDPIE AMASSIEFLG EVFVKMEKRK  300
MEMAGEMAKM RMKMEMKQNQ LIMESQKQMV DACVNALWET KKKKMKVVSL DDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-25Trihelix family protein