PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021923.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 572aa MW: 63919.4 Da PI: 5.6941

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021923.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	176.5	2e-54	170	411	2	239
GRAS 2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +e L+ +A+ ++s++l laq +L rl+++ + p g+p+qR+a yf+ AL++ l++ +++ + + +s+++ +e++ a+k fs +sP++ f PCP021923.1 170 IEELIGAADRFDSDELPLAQVILDRLNNRlrssspSKPVGKPLQRAAVYFKDALQSLLNG-----SDTAARELSSWSDIVETIRAYKGFSGISPVPMF 262 6789*********************98876333445679***************.....66677777778889*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 sh+t+Nqa+lea++g+ H+iDfdi+ G+Q+++L+++La+++ ++ pp lRiT+v+++e + e++ ++e+L++fA+el+++f+ +++ PCP021923.1 263 SHFTTNQALLEALNGSAFFHVIDFDIGLGGQYASLMKELAEKAdvasrNKgnqvPPVLRITAVVPEE--YAVETQLIRENLSQFAQELKIRFQVEFVP 358 ************************************999766551156679******66..999*********************9 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239 ++++e++++++ ++ gE++aV l+ + r l +++++++ +L ++++sP vv PCP021923.1 359 VRTFEMMSFKAVKFMDGEKTAVLLSPYILRRL----CSQNNISCFLGDMRRVSPSVV 411 **********************999998....44444667**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MRVPVSSPHS NNNNQSPKHS TQTNNQSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP 60 SKILAISDVL SHSNHDPVEW EEQVDWDSIM RDLGLHDDNV PNLKNSIPQL NSNDPQISEY 120 LHPQPFDPSQ LVHSDYSINL SEVYSSQNCY DHVINDFHQS GNWNVGVDFI EELIGAADRF 180 DSDELPLAQV ILDRLNNRLR SSSPSKPVGK PLQRAAVYFK DALQSLLNGS DTAARELSSW 240 SDIVETIRAY KGFSGISPVP MFSHFTTNQA LLEALNGSAF FHVIDFDIGL GGQYASLMKE 300 LAEKADVASR NKGNQVPPVL RITAVVPEEY AVETQLIREN LSQFAQELKI RFQVEFVPVR 360 TFEMMSFKAV KFMDGEKTAV LLSPYILRRL CSQNNISCFL GDMRRVSPSV VGLRLLLCPL 420 GSNIVLRTAC CSVGIGIPVY CTCKAIERKD RIAQEKWLLY WAAYGSFSLV EIFSDKLISW 480 CPMYYHMKFA FLVWLQLPTV DHKLLSAHQA EIEYARVMIM KILGSDQPPN SGVPRQNAIE 540 GQIRPPNPDL PGQNAIEGQT RPAPVSESDH DD

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MRVPVSSPHS NNNNQSPKHS TQTNNQSVNF HLGISSLGGY EPTSVLDLRH SPSPVSAEKP  60
SKILAISDVL SHSNHDPVEW EEQVDWDSIM RDLGLHDDNV PNLKNSIPQL NSNDPQISEY  120
LHPQPFDPSQ LVHSDYSINL SEVYSSQNCY DHVINDFHQS GNWNVGVDFI EELIGAADRF  180
DSDELPLAQV ILDRLNNRLR SSSPSKPVGK PLQRAAVYFK DALQSLLNGS DTAARELSSW  240
SDIVETIRAY KGFSGISPVP MFSHFTTNQA LLEALNGSAF FHVIDFDIGL GGQYASLMKE  300
LAEKADVASR NKGNQVPPVL RITAVVPEEY AVETQLIREN LSQFAQELKI RFQVEFVPVR  360
TFEMMSFKAV KFMDGEKTAV LLSPYILRRL CSQNNISCFL GDMRRVSPSV VGLRLLLCPL  420
GSNIVLRTAC CSVGIGIPVY CTCKAIERKD RIAQEKWLLY WAAYGSFSLV EIFSDKLISW  480
CPMYYHMKFA FLVWLQLPTV DHKLLSAHQA EIEYARVMIM KILGSDQPPN SGVPRQNAIE  540
GQIRPPNPDL PGQNAIEGQT RPAPVSESDH DD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	3e-88	GRAS family protein