PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP021920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24823 Da PI: 7.3464 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 60 | 113 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PCP021920.1 60 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 113 5689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.3e-38 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ ++e++rLe+e+++L+++lke PCP021920.1 59 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKEHENTVAEKCRLESEMSKLKDQLKE 150 9****************************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MATNNHQVVE DDHHMLLISH LYSASDVYTQ IVPPQGASKP ARRRRKKRKG GEAGGVGLKK 60 RKLTAEQVNL LELNFGNEHK LESEKKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY 120 STLKKEHENT VAEKCRLESE MSKLKDQLKE AEKEIQRLSE HVYHGGPSNS PSSSLSMEAI 180 DPPFLGEFGV EEYDDVFYTP HNNYIPGMEW MNLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 48 | RRRRKKR |
2 | 42 | 61 | RRRRKKRKGGEAGGVGLKKR |
3 | 42 | 62 | RRRRKKRKGGEAGGVGLKKRK |
4 | 43 | 48 | RRRKKR |
5 | 43 | 49 | RRRKKRK |
6 | 43 | 49 | RRRRKKR |
7 | 43 | 62 | RRRRKKRKGGEAGGVGLKKR |
8 | 43 | 63 | RRRRKKRKGGEAGGVGLKKRK |
9 | 44 | 64 | RRRRKKRKGGEAGGVGLKKRK |
10 | 45 | 65 | RRRRKKRKGGEAGGVGLKKRK |
11 | 46 | 66 | RRRRKKRKGGEAGGVGLKKRK |
12 | 47 | 67 | RRRRKKRKGGEAGGVGLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-68 | HD-ZIP family protein |