PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021696.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 740aa    MW: 80928.5 Da    PI: 5.9494
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021696.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1964119156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r++ +++t+ q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  PCP021696.1  64 RKRYHRHTQRQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 119
                  789999***********************************************998 PP
2START214.14.8e-672574791206
                  HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  ela +a++el+++a+a++p+Wv         e++n+de+l++f+++ +      ++ea+r++++v+m++++lve+l+d++ qW++ +     +a+tl+
  PCP021696.1 257 ELAVAAMEELIRMAEAGDPLWVPGDhnsihqEILNEDEYLRTFPRGIGpkplgLKSEASRETALVIMNHVNLVEILMDVN-QWSTVFCgivsRAMTLD 353
                  57899*****************87778899***************999********************************.******99999****** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                   +s+g      galq+m+ae+q++splvp R+ +fvRy++q  +g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+skv+wvehv++++
  PCP021696.1 354 ILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQNVDGTWAVVDVSLDNLRPSP----VSRSRRRPSGCLIQELQNGYSKVIWVEHVEVDD 447
                  ***********************************************************98....79******************************* PP

                  SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                  + +h+++r+lv+sgla+gak+wvatl+rqc++
  PCP021696.1 448 SAVHNIYRPLVNSGLAFGAKRWVATLDRQCQR 479
                  ******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MFQPSMFENH ILDHMTTSST HKTSDSTGRL LDDDFETKSG TETTMDAPSG DEQDPNDTGP  60
RPKRKRYHRH TQRQIQEMEA FFKDCPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKA  120
QHERHENSIL KSENDKLRAE NNRYKEALAN ATCPNCGGPA AIGEMSFDEQ HLRIENARLH  180
EEIDKISSIA AKYVGKPLTS SFSSQMSSHV PSGRSIDLGV GSFGTQPGFV GEMYGSSSDL  240
LRSVSVPTEA DKPMIVELAV AAMEELIRMA EAGDPLWVPG DHNSIHQEIL NEDEYLRTFP  300
RGIGPKPLGL KSEASRETAL VIMNHVNLVE ILMDVNQWST VFCGIVSRAM TLDILSTGVA  360
GNYNGALQVM TAEFQVPSPL VPTRENYFVR YCKQNVDGTW AVVDVSLDNL RPSPVSRSRR  420
RPSGCLIQEL QNGYSKVIWV EHVEVDDSAV HNIYRPLVNS GLAFGAKRWV ATLDRQCQRL  480
ASSMASNIPA GDLCVITSTE GRKSMLKLAQ RMVMSFCTGV GASTAHAWTT LSATGSDDVR  540
VMTRKSMDDP GRPPGIVLSA ATSFWIPVPP KRVFNFLRDE NSRSEWDILS NGGLVQEMAH  600
IANGRDPGNC VSLLRVNSAN SSQSNMLILQ ESCTDSTGSY VIYAPVDIVA MNVVLSGGDP  660
DYVALLPSGF AILPDGPAGS AGGGALDVGS GGSLLTVAFQ ILVDSIPTAK LSLGSVATVN  720
NLIKCTVERI RAAVTCEQNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein