PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021566.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 839aa    MW: 93450.9 Da    PI: 6.8217
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021566.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.3e-23160261199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+e+          ++ +++l  +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++e
  PCP021566.1 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmsR--QPPTQELGAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGE 253
                  99*****************************733..334459************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+v+r+
  PCP021566.1 254 LRVGVRRA 261
                  *****996 PP
2Auxin_resp115.93.6e-38286368183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt++g++d+d+ rW++SkWr+Lk
  PCP021566.1 286 AWHAIITGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIIGMEDADTKRWRDSKWRCLK 368
                  79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MTSSEVSIRD NCGNQRGETF SSGFSDHNDA RNAGEGHNGH STVSAAGRDA ETALYTELWH  60
ACAGPLVTVP RERERVFYFP QGHIEQVEAS TNQVADQQMP VYNLPSKILC RVINVSLKAE  120
PDTDEVFAQV TLLPESNQDE NAVEKEPPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MSRQPPTQEL GAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE NGELRVGVRR AMRQQGSVPS SVISSHSMHL GVLATAWHAI ITGTMFTVYY  300
KPRTSPAEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIIG MEDADTKRWR  360
DSKWRCLKVR WDETSTIPRP ERVSPWKIEP ALAPPALNPL PMPRPKRSRT NMVPSSPDSS  420
VLTREVGLSK ANVDPVMPGG FSRVLQGQEL PTLRASFAES ESDTAEKSVA WPPSMDEEKI  480
DGVCASRRYG SENWMSSGRH EPTYTDLLSG FGNNVDSSNG ICPPFVDQGN SMRKHSLDKE  540
GKYNLHSWSV LPSSLSLSLD SNQKGRLGNM SYQAQGNSRY GGFGESSVMN GQRVEHPHGN  600
WMMPPPPSPF ENLANAREIV PRPQMLLGKH EAVKPKDGNY KLFGIPLITP DPALSHRNAM  660
NESPRNNQAH TFESDLKSEK SRGSKSIDNP MAVSEPALQI SQQHTRDAQG KSQGGSTRSC  720
TKVHKQGIAL GRSVDLTKFN NYEELIAELD MLFEFGGELM SPKKNWMIVY TDDEGDMMLV  780
GDDPWQEFCS IVRKIFIYTR EEVQKMNPGT LNAHGEDNLS LGAEGVDARV GKSQPLPYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein