PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021561.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 345aa MW: 39697.2 Da PI: 5.2866

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021561.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.8	8.1e-20	43	136	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt++e+ +Lie++r +e+ ++rg+ +p+W+ vs+++r+r ++r p+qC+++w+nl ++kki+++e + ++e++s +++ +++ PCP021561.1 43 RWTRHETFVLIEGKRIVENVVQRGRrstsalgteNFEPKWDLVSSYCRQRSVSRWPVQCRKRWSNLLVDFKKIRNWEAQIKQEAESFWVMRNDV 136 8************999999998555566666588******************************************99999999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MELESMKHEA ASPRPDQADK QQTPDGTCSL VSEDKTKITR HPRWTRHETF VLIEGKRIVE 60 NVVQRGRRST SALGTENFEP KWDLVSSYCR QRSVSRWPVQ CRKRWSNLLV DFKKIRNWEA 120 QIKQEAESFW VMRNDVRRER RLPGFFDREV YNVLVGKEVT AMEACPLALF MPGQTDAKDG 180 DGIEDAAAEE EDEEERPEKD LNGGRDDMAE DRLSSDFEES GQDETTKKSK NENLMQDSPT 240 KTVTTPMPNS GAIKEKLSLG SKTSGENVYQ EKWKQRRVST DESEHSNIDQ LIKVLERNSN 300 MLNAQLEAHN INCHFEREQR KEQNNSILVA LGKVTDVLAR IADQL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MELESMKHEA ASPRPDQADK QQTPDGTCSL VSEDKTKITR HPRWTRHETF VLIEGKRIVE  60
NVVQRGRRST SALGTENFEP KWDLVSSYCR QRSVSRWPVQ CRKRWSNLLV DFKKIRNWEA  120
QIKQEAESFW VMRNDVRRER RLPGFFDREV YNVLVGKEVT AMEACPLALF MPGQTDAKDG  180
DGIEDAAAEE EDEEERPEKD LNGGRDDMAE DRLSSDFEES GQDETTKKSK NENLMQDSPT  240
KTVTTPMPNS GAIKEKLSLG SKTSGENVYQ EKWKQRRVST DESEHSNIDQ LIKVLERNSN  300
MLNAQLEAHN INCHFEREQR KEQNNSILVA LGKVTDVLAR IADQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-72	Trihelix family protein