PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021435.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 882aa MW: 97426.2 Da PI: 8.2851

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021435.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.9e-22	790	870	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+ +ev++Li++r ++ r++ +k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g+++r +++pyf++++ PCP021435.1 790 RWKPEEVKKLITMRGKLRGRFQVAKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSR-----KSWPYFEEMD 870 8******************************************************************96.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence
MAALGVLSPC PYSLLWRPKA VGRCFSCSAG SPTSAGTRGS NVRRSGRMEG PRKSMEDSVK 60 RKMEQFYEGR EGPPIRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGVMFPD FDELGVQKII 120 PDTTFIKKWS HKIEAIVITH GHEDHIGALP WVFFLVKMNT VNVVLVIPAL DLDTPIFASS 180 FTMELIKKRL KEHGIFVPSR LRTFRTKRKF TAGPFEIEPI RVTHSIPDCC GLVLRCSDGT 240 ILHTGDWKID ESPLDGRGFD REALEELSKE GVTLMMSDST NVLSPGRTTS ESSVADALLR 300 HISAAKGRVI TTQFASNIHR LGSVKAAADF TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS 360 SLVKVEDIDS YAPKDLLIVT TGSQAEPRAA LNLASFGSSH SVKLTKEDVI LYSAKVIPGN 420 ESRVMKMLNR ISDLGSTIVM GKNEGLHTSG HGYRGELVIK NGEMLGVSHL RNRRVLSSGF 480 TMLGKENLQL KFSDGDKAFG TSSELCVDER LRIALDGIIV VSMEILRPQN VNDSAENSIK 540 GKIKITTRCL WLDKGKLIDA LYKAAHAALS SCPINCPLAH MERTVSEVLR KLVRKYSGKR 600 PDVIAIAMEN PAVVLADEVS ARLSGKSHVG SEMSQLRKVY DRHQNKGLST RTQADDGKTQ 660 TYFQSQSTRA QADGDKDNTL QSISQQDTEA LTLSMFYSFI SSESELEDDG IEVEGLLPEE 720 DSATSSSKSE KLSSDSEDSE DFWKSLVRLS TGDKSVQDEN GLVAEQEHPQ KDGPENSEIP 780 NPSKPVKRNR WKPEEVKKLI TMRGKLRGRF QVAKGRMALW EEISRNLLAD GINRSPGQCK 840 SLWASLVQKY EESKSGKRSR KSWPYFEEMD GALSDSEELA TK

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence

MAALGVLSPC PYSLLWRPKA VGRCFSCSAG SPTSAGTRGS NVRRSGRMEG PRKSMEDSVK  60
RKMEQFYEGR EGPPIRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGVMFPD FDELGVQKII  120
PDTTFIKKWS HKIEAIVITH GHEDHIGALP WVFFLVKMNT VNVVLVIPAL DLDTPIFASS  180
FTMELIKKRL KEHGIFVPSR LRTFRTKRKF TAGPFEIEPI RVTHSIPDCC GLVLRCSDGT  240
ILHTGDWKID ESPLDGRGFD REALEELSKE GVTLMMSDST NVLSPGRTTS ESSVADALLR  300
HISAAKGRVI TTQFASNIHR LGSVKAAADF TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS  360
SLVKVEDIDS YAPKDLLIVT TGSQAEPRAA LNLASFGSSH SVKLTKEDVI LYSAKVIPGN  420
ESRVMKMLNR ISDLGSTIVM GKNEGLHTSG HGYRGELVIK NGEMLGVSHL RNRRVLSSGF  480
TMLGKENLQL KFSDGDKAFG TSSELCVDER LRIALDGIIV VSMEILRPQN VNDSAENSIK  540
GKIKITTRCL WLDKGKLIDA LYKAAHAALS SCPINCPLAH MERTVSEVLR KLVRKYSGKR  600
PDVIAIAMEN PAVVLADEVS ARLSGKSHVG SEMSQLRKVY DRHQNKGLST RTQADDGKTQ  660
TYFQSQSTRA QADGDKDNTL QSISQQDTEA LTLSMFYSFI SSESELEDDG IEVEGLLPEE  720
DSATSSSKSE KLSSDSEDSE DFWKSLVRLS TGDKSVQDEN GLVAEQEHPQ KDGPENSEIP  780
NPSKPVKRNR WKPEEVKKLI TMRGKLRGRF QVAKGRMALW EEISRNLLAD GINRSPGQCK  840
SLWASLVQKY EESKSGKRSR KSWPYFEEMD GALSDSEELA TK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein