PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP021411.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 414aa MW: 45049.8 Da PI: 8.0952

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP021411.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.9e-40	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCsrfh+ +efDe+krsCr+rL++hn+rrrk+q+ PCP021411.1 97 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSRFHAPEEFDEGKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MDWNSKAASW DLPELEQGTF SNLDSTVDGS SSFGDYRTFK GSNFSVDLKL GQLGGPGNDE 60 LVGMLKEPGG PKTTSSSPSG PLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE 120 LHSKTPQVTI NGNKQRFCQQ CSRFHAPEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSHPG 180 SFLSNYQGTQ LLPFSSSLVY PSTNVINPAW AGIVKTEPDS GVHNLQLPLI DKQNMFLGSS 240 GSTSSSGYEG GKQFSLFQSN NSSPLYHNHQ TSHHHGTSVC QPLLNNISSS ETASGGGGTT 300 KSKMFCDRLT TQIHDSDCAL SLLSSPQTQQ TSEIGLRHTV QQPNSISLMQ QRPGPNGLRG 360 NNSAMEPMDS VLVSNGSGDA NVHCPGMFRL ISDGSQGNGN QHHQSPQTLP FHWQ

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MDWNSKAASW DLPELEQGTF SNLDSTVDGS SSFGDYRTFK GSNFSVDLKL GQLGGPGNDE  60
LVGMLKEPGG PKTTSSSPSG PLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE  120
LHSKTPQVTI NGNKQRFCQQ CSRFHAPEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSHPG  180
SFLSNYQGTQ LLPFSSSLVY PSTNVINPAW AGIVKTEPDS GVHNLQLPLI DKQNMFLGSS  240
GSTSSSGYEG GKQFSLFQSN NSSPLYHNHQ TSHHHGTSVC QPLLNNISSS ETASGGGGTT  300
KSKMFCDRLT TQIHDSDCAL SLLSSPQTQQ TSEIGLRHTV QQPNSISLMQ QRPGPNGLRG  360
NNSAMEPMDS VLVSNGSGDA NVHCPGMFRL ISDGSQGNGN QHHQSPQTLP FHWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-69	SBP family protein