PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021398.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 232aa    MW: 25196.7 Da    PI: 6.4896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021398.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.4e-42771761100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+r+P+yG++g i++lq+q+ +l+a+la+++
  PCP021398.1  77 PCAACKILRRRCAEKCVLAPYFPPNEPLKFTIAHRIFGASNIIKLLQELPESHRADAVSSMVYEANARIRNPIYGCAGAIFQLQKQIGELQAQLAKAQ 174
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  PCP021398.1 175 AE 176
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MEFDAKTTTT MSPPPFSYSP SSSPSSPITT SFPSPNSHPL SNLSSPHAAA SNNISTNPLP  60
TSLSPPPPPP PPVVLSPCAA CKILRRRCAE KCVLAPYFPP NEPLKFTIAH RIFGASNIIK  120
LLQELPESHR ADAVSSMVYE ANARIRNPIY GCAGAIFQLQ KQIGELQAQL AKAQAELANL  180
QCQQGNMIAL ICMDMTQSKE EAILQQQQSN YIDTSCFLDE NNSGTAWEPL WT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-58LBD family protein