PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP021229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 405aa    MW: 44288.5 Da    PI: 6.9918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP021229.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-08141161526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G+Ck Gd+C FaHg
  PCP021229.1 141 ACPDFRK-GHCKKGDTCEFAHG 161
                  7******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MMLGEPHRPN PTVHVPPWLQ LDDPTGEMYS PYPLSGVSVN SDGNASGADF NSPYYLDEAL  60
TTLQRFLPSN ETDLDSDSDI SGRESDAPVD AYSCDHFRMF DFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDTCEFAH GVFECWLHPA RYRTQPCKDG  180
TSCKRRVCFF AHTPEQLRVL PQQSPRGGAN SLNSAESYDG SPLRQAIEAA AASCVKTMPF  240
MSSPPEDSPD VSPPMSPMGR TMSRSLGSSS INEMVASLRN LQLGKVKSLP SSWNVQLGGS  300
SGFGSPVSSG FGSPCSSGFG SPRGSMLRPG FCSLPSTPTR VPVRSGIGYL DLCEEEPAME  360
RVESGRGLRA RMFEKLREEN SLGRVDPGPN CTGAPDVGWV SELVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-126C3H family protein