PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP021229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 405aa MW: 44288.5 Da PI: 6.9918 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.8e-08 | 141 | 161 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd+C FaHg PCP021229.1 141 ACPDFRK-GHCKKGDTCEFAHG 161 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence |
MMLGEPHRPN PTVHVPPWLQ LDDPTGEMYS PYPLSGVSVN SDGNASGADF NSPYYLDEAL 60 TTLQRFLPSN ETDLDSDSDI SGRESDAPVD AYSCDHFRMF DFKVRRCARG RSHDWTECPY 120 AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDTCEFAH GVFECWLHPA RYRTQPCKDG 180 TSCKRRVCFF AHTPEQLRVL PQQSPRGGAN SLNSAESYDG SPLRQAIEAA AASCVKTMPF 240 MSSPPEDSPD VSPPMSPMGR TMSRSLGSSS INEMVASLRN LQLGKVKSLP SSWNVQLGGS 300 SGFGSPVSSG FGSPCSSGFG SPRGSMLRPG FCSLPSTPTR VPVRSGIGYL DLCEEEPAME 360 RVESGRGLRA RMFEKLREEN SLGRVDPGPN CTGAPDVGWV SELVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-126 | C3H family protein |