PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP021103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21314 Da PI: 6.7587 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 4e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la++ PCP021103.1 7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVAKLLAQLPLSDRCRAALTISYEAQARVQDPIYGCVSHIFSLQQQVLSLEAQLASV 104 7*************************89*********************************************************************9 PP DUF260 98 kee 100 ke+ PCP021103.1 105 KEQ 107 987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVA KLLAQLPLSD 60 RCRAALTISY EAQARVQDPI YGCVSHIFSL QQQVLSLEAQ LASVKEQAAK GYSSSNFQGW 120 HQSENSNILM PQSVINESVT PLYSGNKNPN SFGSNANFMI PEVLDDMYGD PSNSMCSLDM 180 QMSNRSWGFD QDHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-62 | LBD family protein |