PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020971.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 707aa MW: 78851.8 Da PI: 6.5519

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020971.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	6.1e-07	132	154	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C G++C F+Hgp PCP020971.1 132 VPCIFFQK-GQCLKGEKCAFSHGP 154 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MVVGAHPQPQ PQQQQQLQQK PAQQPETSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH 60 SEYARVNPRD CWYWLNGSCL NLKCAFRHPP LDGLLGSPAA NSAGPSLSLS HPGVTPTTPA 120 THAAYNPSKQ AVPCIFFQKG QCLKGEKCAF SHGPNPMANS KVLRTPAAPH GTEPSGLKKA 180 FGGLQKCTQE LKVPKASVAK SVGVPPEAKP APKIPTAPFR NGVSIERNVL STKALDDEAL 240 RYKATSVPPV INGGSTSQAN HLPQVHVSDY HGFQNVKDVD EHLRESSPGF DVLVDDELGD 300 SDYYHGEDRF GRTRGHEGRN LNSVNEYDLD RPVDYTSMAD VDRERFCDPQ GYDPYDRMQG 360 QYGWDQHRAS SERQLVGPAR LERRGYRKSE SPENIDELDL RHRLSKHRRV NGLRSIVSHD 420 YAVDGHVEER NNRPLRDSQQ LPPHEGSRSS RLHGRIRLPG GSSPVNGSDL HQEREVDRAR 480 SQGRLSPRRP QISSHQGRLR DRIKGRAEED YNNERRNFGA PLVRREIMDD RGDDFSRPKR 540 LPDLKVVKDG ENKEQSYLGK RKSVMDNNNL AVGDLSFEGP KPLSEILKRK REAEAAAASG 600 SRKSSAHDKR GNNQRESRES NQGNSQTVVT EMNNSLPPAA KEEPKLATAD AVGTEGEDPR 660 EGEYDYEQGD EGDYNYEEGE NAEGEEEYLE EDEDGDDFAK KIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MVVGAHPQPQ PQQQQQLQQK PAQQPETSAE EEALKRNTDC VYFLASPLTC KKGSECEYRH  60
SEYARVNPRD CWYWLNGSCL NLKCAFRHPP LDGLLGSPAA NSAGPSLSLS HPGVTPTTPA  120
THAAYNPSKQ AVPCIFFQKG QCLKGEKCAF SHGPNPMANS KVLRTPAAPH GTEPSGLKKA  180
FGGLQKCTQE LKVPKASVAK SVGVPPEAKP APKIPTAPFR NGVSIERNVL STKALDDEAL  240
RYKATSVPPV INGGSTSQAN HLPQVHVSDY HGFQNVKDVD EHLRESSPGF DVLVDDELGD  300
SDYYHGEDRF GRTRGHEGRN LNSVNEYDLD RPVDYTSMAD VDRERFCDPQ GYDPYDRMQG  360
QYGWDQHRAS SERQLVGPAR LERRGYRKSE SPENIDELDL RHRLSKHRRV NGLRSIVSHD  420
YAVDGHVEER NNRPLRDSQQ LPPHEGSRSS RLHGRIRLPG GSSPVNGSDL HQEREVDRAR  480
SQGRLSPRRP QISSHQGRLR DRIKGRAEED YNNERRNFGA PLVRREIMDD RGDDFSRPKR  540
LPDLKVVKDG ENKEQSYLGK RKSVMDNNNL AVGDLSFEGP KPLSEILKRK REAEAAAASG  600
SRKSSAHDKR GNNQRESRES NQGNSQTVVT EMNNSLPPAA KEEPKLATAD AVGTEGEDPR  660
EGEYDYEQGD EGDYNYEEGE NAEGEEEYLE EDEDGDDFAK KIGVMFS