PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020696.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 482aa    MW: 54811.3 Da    PI: 8.0259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020696.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08344364526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  lC +far G+Ck G++C+F Hg
  PCP020696.1 344 LCLYFAR-GYCKNGASCRFLHG 364
                  9******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    
MSKHSSQPDP ETMSFFEAFN KFRRLKPLEP SLGVLGFFFA SVCVILCFVY LDDRALAKGF  60
QFPGQSERFM WLQSNWPGKH RRVEFLEEEG GGCDVFEGDW LWDEAYPLYQ SNDCRFVDEG  120
FRCSENGCPD LFYTKWRWQP RHCNLPRFDA KLMLEKLRNK RFVFVGDSIG RNQWESLMCM  180
LSPAVPNEDS IYEVNGKPIT KHKGFLVFKF KDFNCTVEYY RSLFLVLQSR PPSGALQNVR  240
TTLKVDQMDW NSVKWRDTDV LVGVFLNKPW SAKNLLYASN PCVSLYLQQQ HEAVQKWQHP  300
HVFLQPKSKE NQNTQELRSP LHRRSCSVSD VSLEDPNSGF GWKLCLYFAR GYCKNGASCR  360
FLHGGGLGDA VVDGGGQVVV GSPSKLEMTE HDKPLLPLHP CSSSPASPSA LLWPPWSKSA  420
KNFSDRCQTT SRSRSSTLCT TSSSGCFCTS AMAAAFECDQ QNQSLSTHTQ RPHPSSCLCC  480
CL