PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020687.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 240aa    MW: 27571.5 Da    PI: 6.6751
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020687.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.52.5e-34571663109
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssgkaaksaa.ks 97 
                  ++kdrhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d ++k+i+WL++++k+ai +l +++++ +   +c++ +   ++ ++++g+++  +  ++
  PCP020687.1  57 ARKDRHSKVYTSKGPRDRRFRLSAHTAIQFYDVQDRLGYDCPGKAIDWLIEKSKAAIEALSESEQPCQeyYDCTNTNVFGQQTEQEIGEQSMHQFwNH 154
                  79*************************************************************88777555554444444444445553333333333 PP

          TCP  98 kksqksaasaln 109
                   +s+ + ++++n
  PCP020687.1 155 PESNGELETMSN 166
                  333333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MLRQRESKNR EEQNEDYQHV HYLMPTSKSA FKQPPVDNAR YGKIVKVHGG HIVRSLARKD  60
RHSKVYTSKG PRDRRFRLSA HTAIQFYDVQ DRLGYDCPGK AIDWLIEKSK AAIEALSESE  120
QPCQEYYDCT NTNVFGQQTE QEIGEQSMHQ FWNHPESNGE LETMSNVSPM NNVNNLKEPV  180
FYPRQLSSLN YAEGALDSAS SLSDSKFKEM GWFQSLVAWN YNANDGGEIC PYNSSHVSLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-38TCP family protein