PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP020055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28519.2 Da PI: 7.1962 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.5e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s PCP020055.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 100.8 | 1.9e-33 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 l ++++++++q++ Lk+++e Lq++qR+llGedL++L+ keL++Le+qLe+slk+iRs+K++++l+q+++lq++e++l e+nk+L++klee PCP020055.1 82 LPANETQNSYQDYLTLKARVEVLQQSQRNLLGEDLQPLNTKELEHLEHQLETSLKQIRSRKTQFILDQLSDLQNREQMLVEANKSLKRKLEE 173 77899************************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS 60 FSMMKTLEKY QSCSYGSLEA NLPANETQNS YQDYLTLKAR VEVLQQSQRN LLGEDLQPLN 120 TKELEHLEHQ LETSLKQIRS RKTQFILDQL SDLQNREQML VEANKSLKRK LEETSVQAPE 180 GMAWEAAGHD HNYNIQQTRL PSHSEAFFHP LEGNNSSSQI GYTHMGSDNE MNVGNPGQYV 240 NGFIPGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-100 | MIKC_MADS family protein |