PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020016.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LSD

Protein Properties

Length: 979aa MW: 108171 Da PI: 8.3404

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.1	5.1e-12	273	297	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ + PCP020016.1 273 CNGCRSVLLYPRGATNVCCALCNII 297 **********************975 PP
2	zf-LSD1	40.5	4.3e-13	312	336	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV PCP020016.1 312 CGGCRTLLMHTRGATSVRCSCCHTV 336 ************************9 PP
3	zf-LSD1	45.2	1.6e-14	416	440	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V PCP020016.1 416 CGNCRTTLMYPYGAPSVKCAVCQYV 440 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence
MGTRFSRWIM KQPRQYFLAV RYKTTSSEYV ASRARDPTFE KFMDKYKNLL KVIAVQDLIL 60 ANPHDPVVSL DFLSKLSQKL HLNCGAVAFL RKYPHILHIY HDPMKSQTFC RLTDRAVQIS 120 KDEAEAINAS LLLVVDQLVW LLSMSTSKML PLRTILKVGR ELGLPDDFED TVIYKNFHLF 180 QLCDAHEPNT RNLKLVNATS DKFVAAAENW RVEEYCKEVY NARRKLLDLV VLGCHGLFID 240 GSKSKPRNLA SDKEAKSLEQ HNEETSMQSQ LVCNGCRSVL LYPRGATNVC CALCNIITPV 300 PPPGTEMAQL ICGGCRTLLM HTRGATSVRC SCCHTVNLAP GRHHQSHDTG EAFQFSTASV 360 QAYARVTMNP FLQMYRQLPK AHFVLYASIW KPAIDFSFVG LIIAKIASSQ VAHINCGNCR 420 TTLMYPYGAP SVKCAVCQYV TNAGMANMRV PIPAHRPNGT TNSGMVPSTS ASQTVVVENP 480 MSVDESGKLK LEDGTELVAV RKPMDWTIVV LRVVAFLATV SATIVMAINK ETKSIVVATV 540 GTTPISVTLT AKFHHTPANV YFVIANGIAS FHNLFMMAVH FFGDHTFKDK GLQLVIVALL 600 DMMIVALLSS GDGAATFMAQ LGKKGNSHAR WNKICDKFEK FCDHAGGAII ASYIGLLLLL 660 HSSSTLLSQI CNCEKPNRNL STMAAVAAVA AGPDHLFNLR NNFYLGAYQA SINNSDIPNL 720 SPDEAVERDC LVFRSYIALG SYQLVINEID ASAATPLQAV KLLALYLSGP DFKESAISNL 780 KELLADPAFG NNPTLRLIAG TVFMHEQDYN EALKYTNAGG TMELNALTIQ IFLKMHRSDY 840 AERQLRLMQQ VDEDHTLTQL AMAWLSLAVG GSKIQEAYLI FQDLSEKSQV TSLILNGKAV 900 CCMHMGNFDE AETLLLEALQ KARRKGSRNS SQPCCMLSSP WKTIFSFPQL KIGHSDHLLV 960 KRALEAEQSF NLAALQAAG

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence

MGTRFSRWIM KQPRQYFLAV RYKTTSSEYV ASRARDPTFE KFMDKYKNLL KVIAVQDLIL  60
ANPHDPVVSL DFLSKLSQKL HLNCGAVAFL RKYPHILHIY HDPMKSQTFC RLTDRAVQIS  120
KDEAEAINAS LLLVVDQLVW LLSMSTSKML PLRTILKVGR ELGLPDDFED TVIYKNFHLF  180
QLCDAHEPNT RNLKLVNATS DKFVAAAENW RVEEYCKEVY NARRKLLDLV VLGCHGLFID  240
GSKSKPRNLA SDKEAKSLEQ HNEETSMQSQ LVCNGCRSVL LYPRGATNVC CALCNIITPV  300
PPPGTEMAQL ICGGCRTLLM HTRGATSVRC SCCHTVNLAP GRHHQSHDTG EAFQFSTASV  360
QAYARVTMNP FLQMYRQLPK AHFVLYASIW KPAIDFSFVG LIIAKIASSQ VAHINCGNCR  420
TTLMYPYGAP SVKCAVCQYV TNAGMANMRV PIPAHRPNGT TNSGMVPSTS ASQTVVVENP  480
MSVDESGKLK LEDGTELVAV RKPMDWTIVV LRVVAFLATV SATIVMAINK ETKSIVVATV  540
GTTPISVTLT AKFHHTPANV YFVIANGIAS FHNLFMMAVH FFGDHTFKDK GLQLVIVALL  600
DMMIVALLSS GDGAATFMAQ LGKKGNSHAR WNKICDKFEK FCDHAGGAII ASYIGLLLLL  660
HSSSTLLSQI CNCEKPNRNL STMAAVAAVA AGPDHLFNLR NNFYLGAYQA SINNSDIPNL  720
SPDEAVERDC LVFRSYIALG SYQLVINEID ASAATPLQAV KLLALYLSGP DFKESAISNL  780
KELLADPAFG NNPTLRLIAG TVFMHEQDYN EALKYTNAGG TMELNALTIQ IFLKMHRSDY  840
AERQLRLMQQ VDEDHTLTQL AMAWLSLAVG GSKIQEAYLI FQDLSEKSQV TSLILNGKAV  900
CCMHMGNFDE AETLLLEALQ KARRKGSRNS SQPCCMLSSP WKTIFSFPQL KIGHSDHLLV  960
KRALEAEQSF NLAALQAAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.8	1e-57	LSD family protein