PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP019994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 895aa MW: 98843.9 Da PI: 6.417 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.6e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + PCP019994.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220 99*****************************8544444..48************************************************..889999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ PCP019994.1 221 LLLGIRRA 228 9****997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.2e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s+F+++YnPras+seFv++++k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k PCP019994.1 253 AAHAAATSSPFTIFYNPRASPSEFVIPLAKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336 79*********************************956689****************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 895 aa Download sequence |
MRLSSAGFSP QSQEGEKKVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNHPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNLQEQKDG YLPAGLGSPN 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR QQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATS SPFTIFYNPR ASPSEFVIPL AKYIKAVYHT CISVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEVEPLT 360 TFPLYPSPFQ LRLKRPWTPG LPSFNGMRDD DLGMNSQLVW LQGNNGDHGM QSLNFPGMGV 420 TPWMQPRLDA SMIGLQSDMY QAMAAAALQE MRAVDPSRPL PTSLLQFQQP QSLPNSNRSA 480 ALMQPQMVQE SHSQQAFLQG VQENHRQSQP QAQTQSHLLQ QQLQHQNSFS NQQQQQLVDH 540 QQIPSAVSSM TQFASASQSQ SPSLQVVTTL CHQQSFSDSN GNPATSTVIS PLHNLMGSFP 600 QDESSHLLNL PRTNQLISSD GWPSKRAAID PLLSSGVSQC VLPRVEQFGP PHTPMSQNSI 660 SLPPFPGREC SLDQEGGTDP QGHLLFGVNI ESSPLIMQGG MSNLRGVGGD CGSTTMHFPS 720 NYMSTAGSDF SLNPAGTPSS CIHESGFPQS SENADSGDLL NRNFVKVYKS GSFGRSLDIT 780 KFSSYQELRN ELARMFGLEG ELDDPVRSGW QLVFVDREND VLLLGDDPWP EFVNSVWCIK 840 ILSPQEVQQM GKRGLELLKS VPNQRLSDNS CDDYGSRQDS RNLSSGITSV GSLEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |