PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019994.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 895aa    MW: 98843.9 Da    PI: 6.417
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019994.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  PCP019994.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  PCP019994.1 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp118.65.2e-39253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s+F+++YnPras+seFv++++k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  PCP019994.1 253 AAHAAATSSPFTIFYNPRASPSEFVIPLAKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                  79*********************************956689****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
MRLSSAGFSP QSQEGEKKVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNHPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNLQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR QQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATS SPFTIFYNPR ASPSEFVIPL AKYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEVEPLT  360
TFPLYPSPFQ LRLKRPWTPG LPSFNGMRDD DLGMNSQLVW LQGNNGDHGM QSLNFPGMGV  420
TPWMQPRLDA SMIGLQSDMY QAMAAAALQE MRAVDPSRPL PTSLLQFQQP QSLPNSNRSA  480
ALMQPQMVQE SHSQQAFLQG VQENHRQSQP QAQTQSHLLQ QQLQHQNSFS NQQQQQLVDH  540
QQIPSAVSSM TQFASASQSQ SPSLQVVTTL CHQQSFSDSN GNPATSTVIS PLHNLMGSFP  600
QDESSHLLNL PRTNQLISSD GWPSKRAAID PLLSSGVSQC VLPRVEQFGP PHTPMSQNSI  660
SLPPFPGREC SLDQEGGTDP QGHLLFGVNI ESSPLIMQGG MSNLRGVGGD CGSTTMHFPS  720
NYMSTAGSDF SLNPAGTPSS CIHESGFPQS SENADSGDLL NRNFVKVYKS GSFGRSLDIT  780
KFSSYQELRN ELARMFGLEG ELDDPVRSGW QLVFVDREND VLLLGDDPWP EFVNSVWCIK  840
ILSPQEVQQM GKRGLELLKS VPNQRLSDNS CDDYGSRQDS RNLSSGITSV GSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein