PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019945.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93891.9 Da    PI: 6.7436
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019945.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PCP019945.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75
                 5679*****************************************************97 PP
2START1686.4e-531613692205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++
  PCP019945.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDLPLWLRDCRAVDVLNVLPTAngGTIELLYMQ 257
                  7899******************************************************.**************************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p  df+ +Ry+  l++g++vi+ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+  +++++lr+l++s+++ 
  PCP019945.1 258 LYAPTTLAPaCDFWLLRYTSILEDGSLVICMRSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSVPEVLRPLYESSAVL 355
                  ****************************************9998899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++k+++a+l+++++
  PCP019945.1 356 AQKMTMAALRQLRQ 369
                  **********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MAMSCKDGNK HALDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSHIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
TQGTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLDPTRV AEILKDLPLW LRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPACDF WLLRYTSILE DGSLVICMRS LKNTQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPCS VPEVLRPLYE SSAVLAQKMT  360
MAALRQLRQI AHEVSQSNVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWSLMGNDGM  420
DDVTILINSS PDKLMGLNLS FGNGFPAVIN SVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAVKVGPCSL AGSRVGSFGG QVILPLAHTL EHEEFLEVIK LEGVGHSPED  540
AMMPREMFLL QLCSGMDENA VGSCAELIFA PIDASFADDA PLLPSGFRII PLDYGKESTS  600
PNRTLDLASA LEIGPTGNKG SSEYSANAGC VRSVMTIAFE FACESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLNS QAGLRSPLGT PEAQTLARWI CNSYRCYLGV ELLKSGNERS  720
ESILKSLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFTCLPGGIC LSSMGRPVSY ERAVAWKVMI ALFTDASSLC QLVNCNFPRS  840
SSWCGRSDVQ ACQLSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein