PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019837.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 890aa MW: 99682.1 Da PI: 4.7929

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019837.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.6e-12	191	213	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ PCP019837.1 191 EDCSYYLKTGSCKFGSNCKFNHP 213 89********************9 PP
2	zf-CCCH	30.1	8.5e-10	238	262	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG C+++H++ PCP019837.1 238 QTECKYYLRSGGCKYGTDCRYSHSK 262 568********************95 PP
3	zf-CCCH	33.7	6.3e-11	283	307	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ PCP019837.1 283 GERECPYYMRNGSCKYASNCRFNHP 307 5799********************9 PP
4	zf-CCCH	25	3.2e-08	418	444	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+rtG Ck+ ++Ck++H++ PCP019837.1 418 PGQRDCSYFLRTGDCKFKSNCKYHHPK 444 5789*********************96 PP
5	zf-CCCH	32	2.2e-10	467	490	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ CkF H+ PCP019837.1 467 QNVCTHYSRFGICKFGPACKFDHS 490 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence
MALSEATSVV PPNPETPCTN HAHSDQGSLP SSPDPDPTPS DLDHAVLDEL QKLDLKEPVE 60 EGDGEPDELQ KLDSTEKVEE DGVGELQKVD LKEEEDGAGE LQKVDLKEEE GGEGVEEEDK 120 SSGEREVEIL NGEENERQSE QSCHSDGGGG GEGWGGNQGW EEDGGEVEEK KAEETQESNR 180 RYQYPVRPEA EDCSYYLKTG SCKFGSNCKF NHPVSRKTNQ VPRERVKDKD ELAENPSQTE 240 CKYYLRSGGC KYGTDCRYSH SKLKPSVAPV LELNFLGLPI RLGERECPYY MRNGSCKYAS 300 NCRFNHPDPT AIGGSDPPSG FGKDGPALLQ IASQSTVAPW SAPRPLNEAP IYTPMMIPPP 360 QGVSSQNSEW NGYRAPPYMP ERSMPARPLY MMNNSVTETN VYKQYPHQNQ VEEFPERPGQ 420 RDCSYFLRTG DCKFKSNCKY HHPKTQTAVA PLFTELSDKG LPLRPDQNVC THYSRFGICK 480 FGPACKFDHS THISSSTTSG PDHQLPFGDW ATTNGVGIAG SRRGTDAASC RFRANPATQF 540 QPPSPPAQKL PMLPTGVQQP VSFTELVEIY RYYRSGLQSE LLEGVAVPLN PINNNPVDDQ 600 GGHPQSIPSP APSDLDPEIV DLIRTLDPAV IEWIRNPDPA FLDEIRKSRE LRLKEKEEKE 660 EGKERETQEE TEKERESEKS ESGSGGGGNE SGGEVVKEVV EESSTSKRSR RRKNRLMKLS 720 KDKAMQGEEL AEKQDQTESK EMFVGDFVLK VSKDKAKPRE ELAEKQDPTE SKEVSKDKAK 780 QREELVEKQF QTESKKMSKE KAKQREEFAE NQDQTEIKVS KDKAKQTEEL AEKQDQTESK 840 KKLSKDKAKQ KEELAERQDQ TESKMKVSKD KAKQREELAE KQDQTESKCN

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence

MALSEATSVV PPNPETPCTN HAHSDQGSLP SSPDPDPTPS DLDHAVLDEL QKLDLKEPVE  60
EGDGEPDELQ KLDSTEKVEE DGVGELQKVD LKEEEDGAGE LQKVDLKEEE GGEGVEEEDK  120
SSGEREVEIL NGEENERQSE QSCHSDGGGG GEGWGGNQGW EEDGGEVEEK KAEETQESNR  180
RYQYPVRPEA EDCSYYLKTG SCKFGSNCKF NHPVSRKTNQ VPRERVKDKD ELAENPSQTE  240
CKYYLRSGGC KYGTDCRYSH SKLKPSVAPV LELNFLGLPI RLGERECPYY MRNGSCKYAS  300
NCRFNHPDPT AIGGSDPPSG FGKDGPALLQ IASQSTVAPW SAPRPLNEAP IYTPMMIPPP  360
QGVSSQNSEW NGYRAPPYMP ERSMPARPLY MMNNSVTETN VYKQYPHQNQ VEEFPERPGQ  420
RDCSYFLRTG DCKFKSNCKY HHPKTQTAVA PLFTELSDKG LPLRPDQNVC THYSRFGICK  480
FGPACKFDHS THISSSTTSG PDHQLPFGDW ATTNGVGIAG SRRGTDAASC RFRANPATQF  540
QPPSPPAQKL PMLPTGVQQP VSFTELVEIY RYYRSGLQSE LLEGVAVPLN PINNNPVDDQ  600
GGHPQSIPSP APSDLDPEIV DLIRTLDPAV IEWIRNPDPA FLDEIRKSRE LRLKEKEEKE  660
EGKERETQEE TEKERESEKS ESGSGGGGNE SGGEVVKEVV EESSTSKRSR RRKNRLMKLS  720
KDKAMQGEEL AEKQDQTESK EMFVGDFVLK VSKDKAKPRE ELAEKQDPTE SKEVSKDKAK  780
QREELVEKQF QTESKKMSKE KAKQREEFAE NQDQTEIKVS KDKAKQTEEL AEKQDQTESK  840
KKLSKDKAKQ KEELAERQDQ TESKMKVSKD KAKQREELAE KQDQTESKCN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-122	C3H family protein