PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP019779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 709aa MW: 78284.5 Da PI: 6.8184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.1 | 7.2e-09 | 135 | 155 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C +G++CkF H+ PCP019779.1 135 ICDFYAK-GWCIRGSSCKFLHV 155 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence |
MEDELEGRVE VDMDISDSPI RSHDHHNGQR TSVHLQNEVN GHLCNSEIMD AKAASSCRVG 60 GEEMADAIPI RDHLGEEVRS VVNPGDEMKQ VDMQQRNGRK QMDSRFFRSG ALETGTTTVS 120 PAAETSGRSK RPAIICDFYA KGWCIRGSSC KFLHVKDNLN SSQPHPEGDV ANSTREVQLD 180 EGVRDITERS RSPGFRDPLA SSSGSDFAFS SHLSSEKIQF LEHIGRQHQF HEKRKFPTVI 240 GEESNVGLST DAKKLHSSKD DTGFLSSLKD IERDDQRNWP AVKDKSIFIS SLHPEPGFFS 300 TGYISSSGKY LIGKNSSHSS SMEEPAGIWS QRMHHDHSSP LVNLALNSSS RNLSTTALFP 360 TSRISSWTGF SLPSSYSNLD SSPHDPLKLF DQSRDYRSTR SSPLLKSSSP FSSSELKSLP 420 TTVSLRSAEI KTKLSSNDWE PSVPFRPSFI LPHAFLSSSG WQYEPLRDSI ELPKLANISG 480 EASFYPEGAT GGNKLHLQHG ESASGTTRPA CDGDTNSMSS HNTYHEKVLD NSCYTRDHNS 540 PVTEAETAGT SAVCQNGTMT GEENPLGPPH PKGSTKQNKA SSATGDSRHR SDGSRHQEGT 600 ELGRFREKNE VDGEHLTDRD VQQESKAVKN FRAALVDLVK ELLKPKWREG SLSKDAHNMI 660 VKRAVEKIIS AFQPHQIPST IETVEQYLSA CRPKISKLVE GYVEKYGKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-42 | C3H family protein |