PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP019779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 709aa    MW: 78284.5 Da    PI: 6.8184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP019779.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.2e-09135155526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+f+a+ G+C +G++CkF H+
  PCP019779.1 135 ICDFYAK-GWCIRGSSCKFLHV 155
                  6******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MEDELEGRVE VDMDISDSPI RSHDHHNGQR TSVHLQNEVN GHLCNSEIMD AKAASSCRVG  60
GEEMADAIPI RDHLGEEVRS VVNPGDEMKQ VDMQQRNGRK QMDSRFFRSG ALETGTTTVS  120
PAAETSGRSK RPAIICDFYA KGWCIRGSSC KFLHVKDNLN SSQPHPEGDV ANSTREVQLD  180
EGVRDITERS RSPGFRDPLA SSSGSDFAFS SHLSSEKIQF LEHIGRQHQF HEKRKFPTVI  240
GEESNVGLST DAKKLHSSKD DTGFLSSLKD IERDDQRNWP AVKDKSIFIS SLHPEPGFFS  300
TGYISSSGKY LIGKNSSHSS SMEEPAGIWS QRMHHDHSSP LVNLALNSSS RNLSTTALFP  360
TSRISSWTGF SLPSSYSNLD SSPHDPLKLF DQSRDYRSTR SSPLLKSSSP FSSSELKSLP  420
TTVSLRSAEI KTKLSSNDWE PSVPFRPSFI LPHAFLSSSG WQYEPLRDSI ELPKLANISG  480
EASFYPEGAT GGNKLHLQHG ESASGTTRPA CDGDTNSMSS HNTYHEKVLD NSCYTRDHNS  540
PVTEAETAGT SAVCQNGTMT GEENPLGPPH PKGSTKQNKA SSATGDSRHR SDGSRHQEGT  600
ELGRFREKNE VDGEHLTDRD VQQESKAVKN FRAALVDLVK ELLKPKWREG SLSKDAHNMI  660
VKRAVEKIIS AFQPHQIPST IETVEQYLSA CRPKISKLVE GYVEKYGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-42C3H family protein